| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputW619_4967 |
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| Symbol | |
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| ID | 6113959 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida W619 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010501 |
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| Strand | + |
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| Start bp | 5485055 |
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| End bp | 5487379 |
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| Gene Length | 2325 bp |
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| Protein Length | 774 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 641624781 |
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| Product | RNA-binding S1 domain-containing protein |
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| Protein accession | YP_001751812 |
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| Protein GI | 170724124 |
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| COG category | [K] Transcription |
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| COG ID | [COG2183] Transcriptional accessory protein |
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| TIGRFAM ID | [TIGR00426] competence protein ComEA helix-hairpin-helix repeat region |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.00735813 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGACAGCA TCAACAGCCG TATCGCCGAG GAACTGGGCG TACGCCCTCA GCAGGTCGAG
GCGGCCGTGG GCCTGTTGGA CGAAGGCTCT ACCGTGCCCT TCATCGCCCG TTACCGCAAG
GAAGTGACCG GTAGCCTGGA CGACACCCAG TTGCGCCACC TGGAAGAGCG CCTGCGCTAC
CTGCGCGAGC TGGACGAGCG CCGTGCGAGC ATCCTGTCCA GCATCGAGGA ACAGGGCAAG
CTGACCCCTG AGCTGGCCCG CGAGATCAAG CTGGCCGACA CCAAGACCCG CCTCGAAGAC
CTTTACCTGC CGTACAAGCA AAAGCGCCGC ACCAAGGGCC AGATCGCCCT GGAAGCCGGC
CTGGGCGAGC TGGCCGACGG CCTGTTCAAC GACCCGCAAC TGGCGCCGGA AAGCGAAGCC
GCGCGCTTCG TCGATGCCGA CAAGGGTGTC GCCGACGTCA AGGCCGCCCT CGAAGGCGCC
AAGTACATCC TCATGGAGCG CTTCGCCGAA GACGCTGCCC TGCTCGACAA GCTGCGCAAC
TTCCTCAAGC AGGAAGCGGT GCTCAGCGCC CGTGTGGTGG CGGGCAAAGA AGAGGAAGGC
GCCAAGTTCC GCGATTATTT CGCCCATGAC GAACTATTGC GCACTTGCCC GTCGCACCGT
GCACTGGCCA TTTTCCGCGG CCGTAACGAA GGCGTGCTGA GCGCATCGCT GAAGGTTGGC
GAAGAGCTGC CGGGCACCCT GCACCCGTGC GAAATGATGA TTGGCAGCCA CTTCGGCGTG
GAAAACCGCA ACCGGCCGGC TGACAAGTGG CTGGGCGAGG TGGTGCGCTG GACCTGGAAG
GTCAAGCTGT ACACCCACCT GGAAACCGAC CTGTTCGGTG AGTTGCGCGA CAATGCCGAA
AGCGAGGCGA TCAACGTCTT CGCCCACAAC CTGCACGACT TGCTGCTGGC CGCCCCGGCC
GGCCCGCGTG CCACTCTGGG CTTCGACCCG GGCCTGCGTA CCGGCTGCAA GGTCGCGGTG
GTCGATGCCA CCGGCAAGCT GCTGGACACG GCTACGGTCT ATCCGCACGC ACCGCGCAAC
GACTGGGACC GCACGATATC GGTACTGGCC GCACTTTGCG CCAAACACTC GGTGGAGCTG
ATTGCCATTG GCAACGGCAC CGCCAGCCGC GAGAGCGACA AACTGATCGC CGAGCTGGTT
AAAAAATACC CGGCGCTGAA GATCACCAAG ATCATGGTCT CCGAAGCCGG TGCGTCGGTG
TACTCGGCAT CGGAGCTGGC TGCCCGTGAA TTCCCTGACC TGGACGTGTC GATTCGTGGC
GCCGTGTCGA TTGCCCGCCG CCTGCAGGAC CCGCTGGCAG AACTGGTGAA GATCGACCCC
AAATCCATCG GTGTCGGCCA GTACCAGCAC GATGTATCCC AGGTGAAGCT GGCACGCGGC
CTGGACGCGG TGGTCGAGGA CTGTGTGAAC GCCGTGGGCG TGGACGTCAA CACCGCTTCG
GTCGCGCTGC TGACCCGCAT CTCCGGCCTC AACGCTACCC TGGCGCAGAA CATCGTCGCG
CACCGCGACG CCAATGGCCC GTTCGCCACC CGTGCCGCAC TCAAGAAGGT CAGCCGCCTG
GGTGAGAAAA CCTTCGAACA GGCCGCGGGC TTCCTGCGCG TAATGAACGG CGACAACCCG
CTGGATGCCT CCGCCGTGCA CCCCGAGGCC TACCCGCTGG TGAAACGCAT CGCCGCCGAC
ACCGGCCGTG ACATCCGCTC GCTCATCGGC GACAGCGGCT TCCTCAAGCG CCTGGACCCA
AAGCAGTTCA CCGATGAAAC CTTCGGCCTG CCCACCGTCA CCGACATCCT CCAGGAACTG
GACAAGCCCG GCCGTGACCC CCGTCCCGAG TTCAAGACCG CCACCTTCCA GGACGGCGTC
GAAGACCTCA AGGACCTGGA GCCCGGCATG ATTCTCGAAG GCGTGGTCAC CAACGTCACC
AACTTCGGCG CGTTCGTCGA CATCGGCGTG CATCAGGACG GCCTGGTGCA TATCTCGGCG
CTGTCCGAGA AGTTCGTCAA GGACCCGCGC GAAGCGGTCA AGGCCGGTGA CGTAGTCAAG
GTCAAGGTCA TGGAAGTGGA CATCCCGCGC AAGCGTGTCG GCCTGTCCAT GCGCATGAGC
GATACCCCGG GCGAAAAAGT CGAAGGCAAC CGTGGCGGCA ACCGTGGCAA TGGCGGCAAC
CGTCAGCAGC AGGCACCACG CCAGCGCGAA ACCGCTAGCG CCGCCCCGGC GAACAACGCC
ATGGCTGCGC TCTTTGCCAA CGCCAAGCAG TTGAAAAAGA AGTGA
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| Protein sequence | MDSINSRIAE ELGVRPQQVE AAVGLLDEGS TVPFIARYRK EVTGSLDDTQ LRHLEERLRY
LRELDERRAS ILSSIEEQGK LTPELAREIK LADTKTRLED LYLPYKQKRR TKGQIALEAG
LGELADGLFN DPQLAPESEA ARFVDADKGV ADVKAALEGA KYILMERFAE DAALLDKLRN
FLKQEAVLSA RVVAGKEEEG AKFRDYFAHD ELLRTCPSHR ALAIFRGRNE GVLSASLKVG
EELPGTLHPC EMMIGSHFGV ENRNRPADKW LGEVVRWTWK VKLYTHLETD LFGELRDNAE
SEAINVFAHN LHDLLLAAPA GPRATLGFDP GLRTGCKVAV VDATGKLLDT ATVYPHAPRN
DWDRTISVLA ALCAKHSVEL IAIGNGTASR ESDKLIAELV KKYPALKITK IMVSEAGASV
YSASELAARE FPDLDVSIRG AVSIARRLQD PLAELVKIDP KSIGVGQYQH DVSQVKLARG
LDAVVEDCVN AVGVDVNTAS VALLTRISGL NATLAQNIVA HRDANGPFAT RAALKKVSRL
GEKTFEQAAG FLRVMNGDNP LDASAVHPEA YPLVKRIAAD TGRDIRSLIG DSGFLKRLDP
KQFTDETFGL PTVTDILQEL DKPGRDPRPE FKTATFQDGV EDLKDLEPGM ILEGVVTNVT
NFGAFVDIGV HQDGLVHISA LSEKFVKDPR EAVKAGDVVK VKVMEVDIPR KRVGLSMRMS
DTPGEKVEGN RGGNRGNGGN RQQQAPRQRE TASAAPANNA MAALFANAKQ LKKK
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