| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputW619_4914 |
|---|
| Symbol | |
|---|
| ID | 6113904 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida W619 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010501 |
|---|
| Strand | + |
|---|
| Start bp | 5428061 |
|---|
| End bp | 5429239 |
|---|
| Gene Length | 1179 bp |
|---|
| Protein Length | 392 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 641624726 |
|---|
| Product | choline ABC transporter, ATP-binding protein |
|---|
| Protein accession | YP_001751759 |
|---|
| Protein GI | 170724071 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG4175] ABC-type proline/glycine betaine transport system, ATPase component |
|---|
| TIGRFAM ID | [TIGR01186] glycine betaine/L-proline transport ATP binding subunit
[TIGR03415] choline ABC transporter, ATP-binding protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.00221379 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAGCATCA TTCGTTTCGA AGACGTCGAC GTCATCTTCT CCAACAAGCC GCGGGAAGCG
CTGGCATTGC TCGATCAGGG CAAAACCCGC GAGCAGATCC TCAAGCAGAC CGGCCTGGTG
GTGGGTGTCG AAAAGGCCAA CCTGGATATC AACAAGGGCG AGATCTGCGT GCTGATGGGC
TTGTCCGGTT CGGGCAAGTC GAGCCTGCTG CGCTGCATCA ACGGCCTGAA CACCGTCAGC
CGCGGCAAGC TGTTCGTCGA GCACGAAGGC AAGCACATCG ACATCGCTCA CTGCACCCCG
GCGGAGCTCA AGATGATGCG CACCAAGCGC ATCGCCATGG TCTTCCAGAA GTTCGCACTG
ATGCCCTGGC TGACCGTGCG CGAGAACATC AGCTTTGGCC TGGAAATGCA GGGCCGCCCT
GAAAAGGAAC GGCGCAAGCT GGTGGACGAG AAGCTCGAGC TGGTGGGTTT GACCCAATGG
CGCAACAAGA AGCCGGACGA ACTCTCCGGC GGCATGCAGC AGCGCGTGGG CCTGGCCAGG
GCGCTGGCCA TGGACGCCGA CATCCTGCTG ATGGATGAAC CGTTCTCGGC CCTCGACCCG
CTGATCCGCC AGGGCTTGCA GGACGAGTTG CTGGAGCTGC AGCGCAAGCT CAACAAGACC
ATCGTGTTCG TCAGCCACGA CCTGGACGAA GCGCTCAAGC TGGGCAGCCG CATCGCCATC
ATGAAGGACG GGCGGATCAT CCAGTACAGC AAGCCCGAGG AGATCGTGCT CAACCCGGCG
GACGAGTATG TGCGCACCTT CGTGGCCCAC ACCAACCCAC TGAACGTGCT TTGCGGCCGC
AGCCTGATGC GCACCCTGGA CAACTGCAAG CGGATCAACG GTTCGGTGTG CCTGGACCCA
GGCATCGACT CGTGGCTGGA CCTGGGCGAA GGGGGCTCGC TCAAGCGTGC ACGCCAAGGG
CAGAACGGGC TGGACCTGCA GAACTGGGCG CCAGGGGAGG ATGTCGAGTT GCTGGAACGC
CGGCCTACGC TGGTCAACGC CGATATCGGC ATGCGCGAGG CGCTGCAGAT CCGTTACCAG
ACAGGCAACA AGCTGGTGCT GCAGGATAAC GACAAGGTGG TGGGGATACT TGGGGATACC
GAGCTCTACC ACGCGTTGCT TGGCAAGAAC CACGGGTGA
|
|---|
| Protein sequence | MSIIRFEDVD VIFSNKPREA LALLDQGKTR EQILKQTGLV VGVEKANLDI NKGEICVLMG
LSGSGKSSLL RCINGLNTVS RGKLFVEHEG KHIDIAHCTP AELKMMRTKR IAMVFQKFAL
MPWLTVRENI SFGLEMQGRP EKERRKLVDE KLELVGLTQW RNKKPDELSG GMQQRVGLAR
ALAMDADILL MDEPFSALDP LIRQGLQDEL LELQRKLNKT IVFVSHDLDE ALKLGSRIAI
MKDGRIIQYS KPEEIVLNPA DEYVRTFVAH TNPLNVLCGR SLMRTLDNCK RINGSVCLDP
GIDSWLDLGE GGSLKRARQG QNGLDLQNWA PGEDVELLER RPTLVNADIG MREALQIRYQ
TGNKLVLQDN DKVVGILGDT ELYHALLGKN HG
|
|---|
| |