| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputW619_4056 |
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| Symbol | truD |
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| ID | 6113025 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida W619 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010501 |
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| Strand | - |
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| Start bp | 4476973 |
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| End bp | 4478031 |
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| Gene Length | 1059 bp |
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| Protein Length | 352 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 641623850 |
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| Product | tRNA pseudouridine synthase D |
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| Protein accession | YP_001750905 |
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| Protein GI | 170723217 |
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| COG category | [S] Function unknown |
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| COG ID | [COG0585] Uncharacterized conserved protein |
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| TIGRFAM ID | [TIGR00094] tRNA pseudouridine synthase, TruD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.00000302919 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGACCGAAC TGGAACTGCT GGGCCCGCGC GCATCGGGCC AACCCCTGGG CACTGCGATA
CTCAAGGCTG TTGCCGAAGA CTTCCAGGTC GATGAGGTGC TGGACATTCC GCTATCGGGC
CAGGGCGAGC ACCTGTGGTT GTGGGTGGAG AAGCGCGACC TCAATACTGA GGAAGCTGCC
CGCCGCCTGG CGCGAGCCGC GGGCGTGCCG GTGCGTTCGA TCAGCTATGC CGGCCTCAAG
GACCGCCAGG CCCTGACGCG CCAGTGGTTC AGCCTGCATC TGCCCGGTAA GGCAGACCCC
GACCTGTCGC GTGCCGAAGA TGCCACTCTG CGTGTGCTCA AGCAGGTGCG TCACCAGCGC
AAACTGCAGC GCGGCGCCCA TTCGGCCAAT GGCTTCACCC TGCGCCTTAC GGCGCTGGCG
GCTGATCATG CTGCCCTCGA TGCCCGCCTG CAGACGCTCA AACAGCAGGG TGTGCCGAAC
TACTTCGGCG GCCAGCGTTT CGGGCATGGC GGCGGCAATG TCCAGGATGC CCAGCACTGG
GCTGCCCGCA AGGCCCTGCC CGAGCAGCGC AACGTGCGTT CGCGGCTGCT CTCGGCTGCC
CGCAGCTACC TGTTCAACCA GGTCCTGGCC GCTCGCGTTG CCGACGGCAG TTGGCAGCGG
GCCCAAGTTG GTGACCTGTT GGCATTCACC GATAGCCGCA GTTTTTTTTC GGCGGGTGAA
CAGGAATGTT CAGATCCTCG CCTGGCCATT CTGGATTTGC ATCCCACCGG CCCGATGTGG
GGCGAGGGCC CGTCTCCAGC GGCCGGCGCG GCCTTGACGC TGGAGACGGC GATAGGTCAG
CAGCATGCAT TGCTGTGCCA ATGGCTGGCC AATGCAGGCA TGAGTCACGA ACGGCGCATC
CTGCGGCTCC CTATTGGCGG CCTGACGTGG CATTATCCCG AGCCTGATAT CCTGCAACTG
GAATTCGTCC TTCCGGCCGG ATGCTTCGCC ACCGTGGTGG TGCGCGAACT CGTCGATCTG
GTGCCGGCAG GGCAGACGGA CAGCCCATGC GTATTCTGA
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| Protein sequence | MTELELLGPR ASGQPLGTAI LKAVAEDFQV DEVLDIPLSG QGEHLWLWVE KRDLNTEEAA
RRLARAAGVP VRSISYAGLK DRQALTRQWF SLHLPGKADP DLSRAEDATL RVLKQVRHQR
KLQRGAHSAN GFTLRLTALA ADHAALDARL QTLKQQGVPN YFGGQRFGHG GGNVQDAQHW
AARKALPEQR NVRSRLLSAA RSYLFNQVLA ARVADGSWQR AQVGDLLAFT DSRSFFSAGE
QECSDPRLAI LDLHPTGPMW GEGPSPAAGA ALTLETAIGQ QHALLCQWLA NAGMSHERRI
LRLPIGGLTW HYPEPDILQL EFVLPAGCFA TVVVRELVDL VPAGQTDSPC VF
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