| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputW619_3827 |
|---|
| Symbol | |
|---|
| ID | 6112791 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida W619 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010501 |
|---|
| Strand | - |
|---|
| Start bp | 4259109 |
|---|
| End bp | 4260467 |
|---|
| Gene Length | 1359 bp |
|---|
| Protein Length | 452 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 641623617 |
|---|
| Product | DEAD/DEAH box helicase domain-containing protein |
|---|
| Protein accession | YP_001750677 |
|---|
| Protein GI | 170722989 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis
[K] Transcription
[L] Replication, recombination and repair |
|---|
| COG ID | [COG0513] Superfamily II DNA and RNA helicases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.0141763 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 0.273496 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAACTGA ATTTCCCGCA CTTGCCTGAG GTTACCTCCG TGTTCTCCCA ATTCGCCCTG
CATGAACGCC TGCTTAAAGC CGTGGCCGAG CTTAAATTTG TCGAGCCAAC CCCGGTGCAG
GCCGCGGCCA TCCCCTTGGC CCTGCAAGGG CGTGATCTGC GTGTGACCGC GCAGACCGGC
AGCGGCAAGA CCGCGGCCTT CGTCCTGCCG CTGCTCAACC GCCTGGTCGA CCTGAAAGGC
GCGCGCGTCG AGATCCGCGC GCTGATCCTG CTGCCGACCC GCGAGCTGGC CCAGCAGACC
CTCAAGCAAG TGCAGCTGTT CTCGCAGTTC ACCTACATCA AGGCGGGCCT GGTCACCGGC
GGTGAGGACT TCAAGGAACA GGCCGCCATG CTGCGCAAGG TGCCGGACGT GCTGATCGGC
ACCCCGGGCC GCCTGCTCGA GCAGCTCAAT GCCGGCAACC TCGACCTGTC CCACGTGCAG
GTGATGATCC TCGACGAAGC CGACCGCATG CTCGACATGG GCTTCGCCGA AGACATGGAG
CGCCTGTGCA AGGAGTGTGA GAACCGCGAG CAAACCCTGC TGTTCTCGGC CACCACCGGC
GGCGCGGCCC TGCGCGACAT CATCGGCAAA GTGCTGAAAG ACCCTGAGCA CCTGATGCTC
AACAGTGTTT CGCAGCTGGC GGAAGGCACC CGCCAGCAGG TCATCACCGC TGACCACGAC
CAGCACAAAG AGGCGATCGT GCAGTGGCTG CTGGCCAACG AAAAATTCGA CAAGGCGATC
ATCTTCACCA ACACCCGCGT GCTTGCCGAC CGTATCTACG GTCACCTGGT CGCCAAAGAC
GTAAAAGCGT TCGTGTTGCA CGGTGAGAAG GACCAGAAGG ACCGCAAACT GGCCATCGAG
CGGTTCAAGC AAGGCAGCTC CAAGGTACTG GTAGCCACCG ACGTGGCGGC CCGTGGCCTG
GACATCGACG GCCTCGACCT GGTGATCAAC TTCGACATGC CGCGCAGCGG CGACGAGTAT
GTACACCGCA TTGGCCGTAC CGGCCGTGCC GGCGGCGAAG GCCTGGCGAT TTCGTTGATC
ACCCACAATG ACTGGAACCT GATGTCCAGC ATCGAACGCT ACCTCAAGCA GCAGTTCGAG
CGCCGTGTGA TCAAGGAAGT GAAGGGCACC TACAACGGGC CGAAGAAGGT CAAGGCGTCG
GGCAAGGCTG CCGGCACCAA GAAGAAAAAG ACCGAGAAGA AAACTGGCGA CAAGAAGGCC
GTGAAGCGCA AGCCTACCGC CAAGCCGAAG GCCAATGCAC CGCTGACCAG CTCCGATGGC
CTGGCACCGC TGAAAAAGCG CAAGCCTGCT GCTGAGTAA
|
|---|
| Protein sequence | MQLNFPHLPE VTSVFSQFAL HERLLKAVAE LKFVEPTPVQ AAAIPLALQG RDLRVTAQTG
SGKTAAFVLP LLNRLVDLKG ARVEIRALIL LPTRELAQQT LKQVQLFSQF TYIKAGLVTG
GEDFKEQAAM LRKVPDVLIG TPGRLLEQLN AGNLDLSHVQ VMILDEADRM LDMGFAEDME
RLCKECENRE QTLLFSATTG GAALRDIIGK VLKDPEHLML NSVSQLAEGT RQQVITADHD
QHKEAIVQWL LANEKFDKAI IFTNTRVLAD RIYGHLVAKD VKAFVLHGEK DQKDRKLAIE
RFKQGSSKVL VATDVAARGL DIDGLDLVIN FDMPRSGDEY VHRIGRTGRA GGEGLAISLI
THNDWNLMSS IERYLKQQFE RRVIKEVKGT YNGPKKVKAS GKAAGTKKKK TEKKTGDKKA
VKRKPTAKPK ANAPLTSSDG LAPLKKRKPA AE
|
|---|
| |