| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputW619_2112 |
|---|
| Symbol | |
|---|
| ID | 6111065 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida W619 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010501 |
|---|
| Strand | + |
|---|
| Start bp | 2345152 |
|---|
| End bp | 2346654 |
|---|
| Gene Length | 1503 bp |
|---|
| Protein Length | 500 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 641621907 |
|---|
| Product | proline/glycine betaine transporter |
|---|
| Protein accession | YP_001748981 |
|---|
| Protein GI | 170721293 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | [TIGR00883] metabolite-proton symporter |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 33 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAATCAC GCAAGAAAAC CGTCAAGCCG ATCGGCTTGA AAGACATCAC CATCGTCGAC
GACGCCAAGA TGCGCAAGGC GATCACCGCC GCCGCGCTGG GCAATGCCAT GGAGTGGTTC
GACTTCGGCG TATACGGCTT CGTCGCCTAT GCCCTGGGCA AGGTGTTCTT CCCCAACGCC
GACCCCAGCG TGCAGATGAT CGCGGCCTTG GCCACTTTCT CGGTTCCGTT CCTGATTCGC
CCGTTGGGCG GGCTGTTCTT CGGCGCCCTG GGCGACAAGT TCGGCCGCCA GAAGATCCTC
GCCGCGACCA TTGTGATCAT GTCGCTCAGT ACCTTCGCCA TCGGCTTGAT ACCGTCCTAT
GATTCCATTG GCATCTGGGC GCCGATCCTG CTGCTGCTGG CGAAAATGGC CCAAGGCTTC
TCGGTGGGTG GTGAATACAC CGGCGCCTCG ATCTTCGTCG CCGAATACGC ACCCGACCGC
AAGCGCGGCT TCCTCGGCAG CTGGCTGGAC TTTGGCTCGA TTGCCGGCTT CGTCCTCGGT
GCCGGCGTGG TAGTGCTGAT TTCCACCTTC TTGGGCGAGG AAAAATTCCT TGAATGGGGC
TGGCGTCTGC CGTTCTTCCT GGCCTTGCCG CTGGGCATCA TCGGCCTCTA CCTGCGCCAT
GCGCTGGAAG AGACCCCGGC GTTCCAGCAG CATGTCGAAA AACTTGAACA GGGCGACCGC
GAAGGCCTGG CCTCGGGGCC CAAGGTGTCG TTCAAGGAAG TCGCCACTAA ACATTGGCGC
AGCCTGGTGA CGTGCATTGG CGTGGTGATC GCCACCAACG TCACGTACTA CATGCTGCTT
ACCTACATGC CCAGCTACCT GTCGCACAAC CTGCACTATA GCGAAGACCA CGGTGTGCTG
ATCATCATCG CGATCATGGT CGGCATGCTG TTCGTGCAGC CGATCATCGG CCTGCTCAGC
GACAAGTGGG GCCGCCGCCC GTTCATCATC GTCGGCAGTG TCGGGCTGTT CGCCCTGGCC
ATCCCGGCCT TCATGCTGAT CAACAGCGGT GTGCTTGGGG TGATCTTCGC CGGCTTGCTG
ATCATCGCCG TGTTGCTCAA CTTCTTCATC GGCGTGATGG CGTCGACCCT GCCGGCGATG
TTCCCCACCC ACATTCGCTA CAGCGCCCTG GCCAGCGCCT TCAACATTTC GGTGCTGATC
GCCGGCCTGA CCCCGACCCT GGCTGCCTGG CTGGTAGAGA GCACTGGTGA CCTGTACATG
CCGGCGTACT ACCTGATGGT GATTGCCGCC ATCGGCCTCA TTACCGGCCT GACCATGAAA
GAAACCGCCA ATAAGCCACT GCGTGGCGCT GCCCCAGCGG CCTCGGATAT CGATGAGGCG
CGTGAGTTGC TGCAGGAGCA CCACGACAAC ATCGAACAGA AGATCGAAGA CATCGACGAA
CAGATTGCCG AGCTTGAGGC CAAGCGCAAG TTGCTGGTGC AGCAACACCC GCGCATCGAG
TAG
|
|---|
| Protein sequence | MKSRKKTVKP IGLKDITIVD DAKMRKAITA AALGNAMEWF DFGVYGFVAY ALGKVFFPNA
DPSVQMIAAL ATFSVPFLIR PLGGLFFGAL GDKFGRQKIL AATIVIMSLS TFAIGLIPSY
DSIGIWAPIL LLLAKMAQGF SVGGEYTGAS IFVAEYAPDR KRGFLGSWLD FGSIAGFVLG
AGVVVLISTF LGEEKFLEWG WRLPFFLALP LGIIGLYLRH ALEETPAFQQ HVEKLEQGDR
EGLASGPKVS FKEVATKHWR SLVTCIGVVI ATNVTYYMLL TYMPSYLSHN LHYSEDHGVL
IIIAIMVGML FVQPIIGLLS DKWGRRPFII VGSVGLFALA IPAFMLINSG VLGVIFAGLL
IIAVLLNFFI GVMASTLPAM FPTHIRYSAL ASAFNISVLI AGLTPTLAAW LVESTGDLYM
PAYYLMVIAA IGLITGLTMK ETANKPLRGA APAASDIDEA RELLQEHHDN IEQKIEDIDE
QIAELEAKRK LLVQQHPRIE
|
|---|
| |