| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputW619_1815 |
|---|
| Symbol | |
|---|
| ID | 6110766 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida W619 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010501 |
|---|
| Strand | + |
|---|
| Start bp | 2019564 |
|---|
| End bp | 2021582 |
|---|
| Gene Length | 2019 bp |
|---|
| Protein Length | 672 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 641621611 |
|---|
| Product | alpha amylase catalytic region |
|---|
| Protein accession | YP_001748688 |
|---|
| Protein GI | 170721000 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0366] Glycosidases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.474679 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 0.202822 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCGCGCA ACGAGCCCTT CGAAAGCGTA CCGATGGCGA ACGATCACCC CGACCAGGCC
ATCAGCCTGT CCCAGGCGCT GATGGCGCCG CGCATCGTGA TCGAGGATAC CCAGCCTGCA
CTTGACGGTG GCGGTTTCGC CGTCAAGGCC ATCAGCGGCC TGCCGGTTGC GGTTAGTAGC
AAGGTATACA GCGACGGCCA CGATCGCCTG GCCGTGATGC TCAACTGGCG GCAGGCCGAT
AGTCGGCGAT GGCATTGCGT GCCGATGCAT TCGCCGGGCA ACGACTTGTG GCTGGCCGAG
TTCACCCCCG CTGACCTGGG CCCGCACCTT TTCAGCATCG AGGCCTGGAT CGACCCGTTC
GCCACCTATT GCCACGACCT CGAGAAGAAG TTCCATGCTG GCGTCGAGGT CAAGCTGGAG
CTGGAGGAGG GCCGCTTGTT GCTTGGCAAA GGTGCAGAGC GCAGCGAGGG CGAGTTGCGC
GAGCAGATCA AGGCGCTGCA GGCGCAGCTG CCCGCGCTGT CGCAGGCTGA CCAGGTGGCG
CTGTTACTGG GGGCACAGGC GTCGCGCCTG ATGACCGAGG CCGAGCACCG CAGCTACCTC
ACCTGCAGCC GCGAGTTCCC GGTAGATGTC GACCGCCCGG CCGCGCAGTT CGCCAGCTGG
TACGAGCTGT TTCCACGTTC GATCACCGAC AGTCCAGAGC GCCACGGCAC CTTCAACGAC
GTGCACGAGC GTTTGCCGAT GATTCGCGAC ATGGGCTTTG ACGTGCTGTA TTTCCCGCCC
ATTCATCCGA TCGGCAAGCA GCACCGCAAG GGCCGCAACA ACGCCTTGCA GGCTGAGCCC
AACGACCCCG GCAGCCCCTA CGCCATCGGC AGCCCCGAAG GCGGGCACGA TGCCATTCAC
CCGCAGCTGG GCACCCGGGA GGACTTCCGC CGCCTGGTGG CCGCCGCCGG CGAGCACGGG
CTGGAGATAG CCCTGGACTT CGCCATCCAG TGCTCCCAGG ACCACCCGTG GCTCAAGGAA
CATCCCGGCT GGTTCAGCTG GCGCCCCGAC GGCACCATCC GCTATGCCGA AAACCCGCCG
AAGAAGTACC AGGACATCGT CAACGTAGAC TTCTACGCCG CTGACGCCGT GCCGTCGCTG
TGGCTGGCCC TGCGCGATGT GGTGGTGGGC TGGGTCGAGG AGGGGGTAAG AACCTTCCGC
GTCGACAACC CGCACACCAA ACCCCTGCCG TTCTGGCAAT GGTTGATCGC CAATGTGCGC
AGCCAGTACC CGGACGTGAT CTTCCTCGCC GAGGCGTTCA CCAAACCGGC GATGATGGCG
CGCCTGGGCA AGGTGGGTTA CGCCCAGAGC TACACCTATT TCACCTGGCG TAATACCAAA
CAGGAACTGC GCGAGTATTT CGAGCAGCTC AATCAGCCGC CCTGGAGCCT GTGTTACCGT
CCCAACTTCT TCGTCAATAC GCCGGACATC AACCCGTTCT TCCTGCACAC CAGCGGCCGT
GCGGGCTTTC TGATCCGCGC CGCGCTGGCG ACCATGGGGT CGGGGCTGTG GGGCATGTAC
TCGGGCTTCG AACTGTGCGA AGGCACACCC CTGCCGGGCA AGGAAGAGTA CCTGGACTCG
GAGAAGTACG AGATCCGGCC GCGCGACTTC ACCCAGCCCG GCAACATCAT TGCCGAAATC
GCCCAGCTCA ACCGCATCCG CCGGCAGAAC CGCGCCCTGC AGACGCACCT GGGGGTGGCG
TTCTTCAACT GTTGGAACGA CAACATCCTG TATTTCGCCA AGCGCACGCC TGAGCGCGAC
AACTACATCC TGATAGCGGT CAGCCTCGAC CCGCACAACG CCCAGGAGGC CAGCTTCGAA
CTGCCGCTGT GGGAGCTGGG GCTGGACGAT GACGCCGACA CTCTGGGCGA AGACCTGATG
AACGGCCATC GCTGGACCTG GCATGGCAAG ACCCAATGGA TGCGTATCGA ACCATGGCAT
CAGCCATTTG GTATCTGGCG CATAGAAAAG GCCCGATAA
|
|---|
| Protein sequence | MSRNEPFESV PMANDHPDQA ISLSQALMAP RIVIEDTQPA LDGGGFAVKA ISGLPVAVSS
KVYSDGHDRL AVMLNWRQAD SRRWHCVPMH SPGNDLWLAE FTPADLGPHL FSIEAWIDPF
ATYCHDLEKK FHAGVEVKLE LEEGRLLLGK GAERSEGELR EQIKALQAQL PALSQADQVA
LLLGAQASRL MTEAEHRSYL TCSREFPVDV DRPAAQFASW YELFPRSITD SPERHGTFND
VHERLPMIRD MGFDVLYFPP IHPIGKQHRK GRNNALQAEP NDPGSPYAIG SPEGGHDAIH
PQLGTREDFR RLVAAAGEHG LEIALDFAIQ CSQDHPWLKE HPGWFSWRPD GTIRYAENPP
KKYQDIVNVD FYAADAVPSL WLALRDVVVG WVEEGVRTFR VDNPHTKPLP FWQWLIANVR
SQYPDVIFLA EAFTKPAMMA RLGKVGYAQS YTYFTWRNTK QELREYFEQL NQPPWSLCYR
PNFFVNTPDI NPFFLHTSGR AGFLIRAALA TMGSGLWGMY SGFELCEGTP LPGKEEYLDS
EKYEIRPRDF TQPGNIIAEI AQLNRIRRQN RALQTHLGVA FFNCWNDNIL YFAKRTPERD
NYILIAVSLD PHNAQEASFE LPLWELGLDD DADTLGEDLM NGHRWTWHGK TQWMRIEPWH
QPFGIWRIEK AR
|
|---|
| |