| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputW619_1528 |
|---|
| Symbol | |
|---|
| ID | 6110462 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida W619 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010501 |
|---|
| Strand | + |
|---|
| Start bp | 1684729 |
|---|
| End bp | 1685544 |
|---|
| Gene Length | 816 bp |
|---|
| Protein Length | 271 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 641621308 |
|---|
| Product | 4-amino-4-deoxychorismate lyase |
|---|
| Protein accession | YP_001748402 |
|---|
| Protein GI | 170720714 |
|---|
| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0115] Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase |
|---|
| TIGRFAM ID | [TIGR03461] aminodeoxychorismate lyase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 0.50633 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCACAGCT GGATCGACGG CCAGCCTGCG ACTGCGGTCA ACCTGCAGAA CCGTGGCCTG
GCCTATGGCG ATGGTTTGTT CGAGACCATC GCCGTACGCA GTGGCCGGCC CAGCATGCTG
GACGGTCACC TGGCACGCCT GGCCCTGGGC TGCCAGCGCC TGGCAATCAA TGCCGACGTT
GCGTTGGTGC GCGATGAAAT CCTGCGTTAT GCCAGCCAAC TGGGTGACGG CGTCGCCAAG
CTGATCCTCA CCAGGGGCGA CAGCCAGCGT GGCTATGCGC CGATGGCAGG TGCTGCGCCG
CGGCGCATCC TGCTGAGCAG CCCGCTGCCC AGCTACCCGG GCGAACATGC CGAACACGGT
GTGCGTCTTT TCCCTTGCCA GACCCGGCTT GGGGAACAAC CGTTGCTCGC AGGCCTCAAA
CACCTCAACC GCCTGGAGCA GGTGCTGGCC CGTGCCGAAT GGCAGGACAG CGAACATGCC
GAAGGCTTGA TGTGTGATGG GCAAGGCAGG CTGGTCGAAG GTGTTTACAG CAATCTTTTC
CTGGTGCAAG GCGGCGTGTT GCTCACCGCC GAACTCAGCC GTTGCGGCGT TGCAGGCGTG
ATGCGAGGTG CGTTGCTGGA ACAGGCGCAG GCACAGGGTA TCCCGGTGCA GGTGCGCGAC
CTGTCTTTCG ACGAGCTTGC GCTGGCTGAT GAGGTATTTA TCTGCAACAG CGTTTATGGG
GTCTGGCCTG TGCGGGCTTT TGCTGCACTG AACTGGTCGC CGGGCCCGCT CACCCGTAAA
CTGCAGGCCT TTGCCCGTAC GTTACTGGAT ACCTGA
|
|---|
| Protein sequence | MHSWIDGQPA TAVNLQNRGL AYGDGLFETI AVRSGRPSML DGHLARLALG CQRLAINADV
ALVRDEILRY ASQLGDGVAK LILTRGDSQR GYAPMAGAAP RRILLSSPLP SYPGEHAEHG
VRLFPCQTRL GEQPLLAGLK HLNRLEQVLA RAEWQDSEHA EGLMCDGQGR LVEGVYSNLF
LVQGGVLLTA ELSRCGVAGV MRGALLEQAQ AQGIPVQVRD LSFDELALAD EVFICNSVYG
VWPVRAFAAL NWSPGPLTRK LQAFARTLLD T
|
|---|
| |