| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputW619_1083 |
|---|
| Symbol | |
|---|
| ID | 6110002 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida W619 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010501 |
|---|
| Strand | - |
|---|
| Start bp | 1191917 |
|---|
| End bp | 1193962 |
|---|
| Gene Length | 2046 bp |
|---|
| Protein Length | 681 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 641620848 |
|---|
| Product | TonB-dependent receptor |
|---|
| Protein accession | YP_001747957 |
|---|
| Protein GI | 170720269 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.654229 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 39 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTGTGCT CTCCCCTACG CCTCTCCCCC CTCGCCGTCG CCCTCTGGCT AGCCTCATCA
CCCAGCCAGG CTGTGGAACT CGAACCCCAG ATCATCACCG CCAACCCACT GGGCAACCGC
GAGCTGGCTG CCCCCAGCAC CGTGCTCGAA GGCGACGAGC TGCTGCAGCA ACAGCACGGT
AGCCTGGGCG AAACCCTCAA CAAACAGCCC GGCGTCGCCT CCACCTGGTT TGGCCCAGGC
GCCAGCCGCC CGGTGATTCG CGGCCTGGAC GGTGACCGTA TCCGCATCCT GCGTAACGGC
GTCGGCGCCC TCGACGCCTC GGCGCTGTCG TACGACCATG CCGTGCCACT GGACCCGGTA
ACCGTCGAGC GCGTCGAAAT CGTCCGTGGC CCCGCCGCCT TGCTCTACGG CGGCAACGCC
ATCGGTGGGG TGGTCAATAC CTTCGACAAC CGCATCCCCG ACGCGCCCAT CGAGGGCATT
CACGGTGCCG GTGAACTGCG TTACGGCGGT GCCGATACCA CGCGCAGCAG TGCCGGCAAG
CTGGAAGCCG GTGACGGCAC CTTCGCCCTG CACCTGGATG CCAACAGCCG CCAGTTCAAC
GACCTGCGCA TCCCAGGCTA CGCCCGCAGC TCGAAAGTGC GCGACGCTGA TGAGCCCGGC
AGCAAACACC GCCTGGAAAA CAGCGACGGT CGCCAGGATG GCGGCGCAGT GGGCGGTTCC
TACCATTGGG ATCACGGCTA TGCGGGCCTG TCCTACAGCC GCTACGACAG TAACTACGGC
TCAGTGGCCG AGTCCGGTGT GCGCCTGGAC ATGAAGCAGG ATCACTACGG CTTCGCCTCC
GAACTGCGTG ACCTCGAGGG CCCCTTCAGC TCGGTCAAGG TCGATGCCGG TTACACCGAT
TACGAGCACA GCGAAATCGA AGAAGGCGAA GTGCACACCA CCTTCAAGAA CAAGGGCTAT
GAGGCGCGTA TCGAGGCCAG GCACCAACCG ATCGGCCCGC TGGAAGGCGT GATCGGCGCC
CAGGTCAGCC GCAACGAATT CTCGGCACTG GGTGAAGAAG CCTTCGTACC GCACACCGAT
ACCGATAGCC TGGCGTTGTT CATGCTTGAG CAATGGCAGG CCACCGAACG CCTCAACCTG
AGCCTGGGTG CGCGCCTGGA ACACACCCGC GTCGACCCGG ATGCCAAAGG CAACGAAAAC
TTCGTCGATG CCGACAGCGC CAGCAGCTTC AATGCCTTGA GCCTGTCTTC GGGGGCGGTG
TACCAACTCG ACCCGGTCTG GGCGCTCGCT GCCAACGTCG GTTACACCGA GCGTGCCCCG
ACCTTCTACG AGCTTTACGC CAACGGCGCC CACGTCGCCA CCGGGGCTTA TGAAGTCGGT
GATGCCAGCC TGAACAAGGA AAAAGCCATC TCCGCCGACC TGGCACTGCG CTTCGACAAT
GGCACCCACA AGGGCAGCGT CGGGGTGTTC TACAGCCATT TTCGCAACTA CATCGGCCTG
ATCGGCACGG GCAACATGCG AGAGGGCCAT GACCACGACC ATGGCGACGA TGATCATGAC
CACGATCACG ACGATGGGGG TTTCCCTGAG TATCAGTACC AGGGTGTGCG GGCGCGTTTC
TACGGCATCG AAGCCCAGGA CCGTTGGCAG TTGGTCGAGA ACCGCTACGG CAGTTTCGCT
CTCGAGCTTT CGGGCGACTA CACCCGAGCC AAGAACCTCG ACAGCGGCGA GCCGCTGCCG
CGCATTGCGC CTTTGCGGCT GAACAGCGGA CTGGTCTGGG AGCTGGACCG CTGGCAGGCG
CGCGTTGATG TGCAGCATGC CGCGTCGCAG CATCGCAAGC CGGCGAATGA AACCAGTACT
GATGGTTACA CCACCCTGGG AGCGAGTGTG GGGTATCGCT TCGATATCGG GCAGAGCCAG
TGGCTGGCGT TCGTGCGCGG TGAGAACCTG ACGGATCAGA CCGTGCGTTA CGCCAGTTCG
ATTCTGCGCG ATATAGCACC GGCGCCGGGG CGTAGTGTGG AAGTAGGCCT GCGCACGACC
TTCTGA
|
|---|
| Protein sequence | MLCSPLRLSP LAVALWLASS PSQAVELEPQ IITANPLGNR ELAAPSTVLE GDELLQQQHG
SLGETLNKQP GVASTWFGPG ASRPVIRGLD GDRIRILRNG VGALDASALS YDHAVPLDPV
TVERVEIVRG PAALLYGGNA IGGVVNTFDN RIPDAPIEGI HGAGELRYGG ADTTRSSAGK
LEAGDGTFAL HLDANSRQFN DLRIPGYARS SKVRDADEPG SKHRLENSDG RQDGGAVGGS
YHWDHGYAGL SYSRYDSNYG SVAESGVRLD MKQDHYGFAS ELRDLEGPFS SVKVDAGYTD
YEHSEIEEGE VHTTFKNKGY EARIEARHQP IGPLEGVIGA QVSRNEFSAL GEEAFVPHTD
TDSLALFMLE QWQATERLNL SLGARLEHTR VDPDAKGNEN FVDADSASSF NALSLSSGAV
YQLDPVWALA ANVGYTERAP TFYELYANGA HVATGAYEVG DASLNKEKAI SADLALRFDN
GTHKGSVGVF YSHFRNYIGL IGTGNMREGH DHDHGDDDHD HDHDDGGFPE YQYQGVRARF
YGIEAQDRWQ LVENRYGSFA LELSGDYTRA KNLDSGEPLP RIAPLRLNSG LVWELDRWQA
RVDVQHAASQ HRKPANETST DGYTTLGASV GYRFDIGQSQ WLAFVRGENL TDQTVRYASS
ILRDIAPAPG RSVEVGLRTT F
|
|---|
| |