| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputW619_0405 |
|---|
| Symbol | |
|---|
| ID | 6109313 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida W619 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010501 |
|---|
| Strand | + |
|---|
| Start bp | 435987 |
|---|
| End bp | 440654 |
|---|
| Gene Length | 4668 bp |
|---|
| Protein Length | 1555 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 641620162 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001747280 |
|---|
| Protein GI | 170719592 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 0.354945 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCCATCC AGCCAAGTCC TGTTCCTGAC TTTCGTCGGG CAGTCGCTAC CGAGTTTCTC
AGTCGCCCAA CCCTGCGTAG TGTTCTGAGC CAGCAGGTTC TCGAATTGCT GGTCCCCTGC
CATGCCACTC TGGCTGGTGC CGGGCTGCCC GATGCCGAAT CGCTCATACT CAACATCCCT
GCCCACATTG CGTCCGGCCC ACAGACCTAC GATGCCTGGA CACCTCGGCC ATTGTTGGAG
GTCATGCTTG AAGCATTGCA CGCCCGTCAG CCCCTGGCGT CGCTAGGGGC TGACGGTGGG
GATTTCCTGC TGGCGGTCCG GGAACCTTGG TTCCTGCGCG ACCAGGCGGG TAACCCGTTG
CCGTCCGGGG CGATTTCAAT CGGGGCCCAA CTGGCTGAGC TGGATGACCT CCTGCTTTTG
CTTGCGGACA GCTTCTGCCA AGCCCAGGTC GATTTCTGGA AGGCGCCAGG CAGTCAGGGC
GTTAGCCGGG ACCTGTGGCT GCAGCACCTG CTCAAAAGGG TGTTGTTGCA TAATTTGCCA
CTGCAGGGGC TGGATGAACA ACAACGTCAG TGTTTGCTCA GCTTGCTTAA GAATCACGGC
TCCACTCCTT CGGTTTTTCT GGTCCAGGTG CAACTCGATA AGGATGTTCA GTGGCTGCCC
AACCTGCTGG TCAGGGGCGA GTGGGACGAA CGCGAGGTGT TTCTGTGGTG CGCCCCGTCC
AGCCTGGTGA GGGCATTTTC ATCGCTGGAT CTCTTCGCTA AAGCGCTGCG GGACGAACTT
GCCGAGCGCC AGCGCTTCGA ATCCATGGCA TGGCACCGCT ATGAGCTCGA AGGCGACGTG
TTTGCCCAGC AAAGCAGCCT GCTGCTGGAG ATCATGCTCG ATGACATTGA GCGTTTGCGT
TATGCGCAGT TGCCAAACTG TTCGCTGCTT GAGAGGGACT TTGCTGCACT GAGTGACCCC
GCGCGCTGGT TCATTGAAGG TTACGGCCAG GCCAGCGGGG CACAGATTGC GTTGCCGCCT
GGCCTGCGCC ATAGCAGTGC TGCGAATGGC TTTGCCTATC AGCGGGGGGT GTTCGAACTG
GCGTTGGCTC AGGCTCAGTC CGAAGGGAGC GGGGCGCTCG AGGATGTGCT CGATCTGCGC
AGTTATACCC GGCAGGTGCT GCGGGCGCAG ATGCTTGCCG ATTTTCCGGT CGAAGCCAAT
TACTTCTCGG ATGACCTGGA CCTGCAGTTG ACCATCAATG CTGGCTGGCC CGGTGGTGCA
GGCGTTGGGC CGGGTGATTC GACGGTTGAA CACCGCAGCA TGACCTTGAC CGAGTTCGCC
ATCGGTAATC TCTGGTCGCT TCAAAACGCA CAGCTTACCG CCGTAACGCA CCGTGAAAAC
CAGTTGATCA TGGACTGGAT GAATGCCGAC TACGTCAAGT CGCTGGTGCA GCGGGTCGAC
ATCGGCAAGC ACTACCCCAC CTACGTCGCG CGGAAGCTGG ACGACCCCGC TACCCAAGCC
GAGCGGATCA AACGCTTTGG CCGTGAATGG CGGTGTTCAC TACTGTTCAG CGCGCTCTAT
GCCCGCTTGC AGGGCGAGCT GAGCGACGCA GGCTTGCAAT GTGTTACAGA CTTCTGCCAC
GGCTACCTTG ATCCGCAATT GCCAGCGCTG ATGCTGATGC CTCTGGCCTT CAGGCGTGAA
GCGGGCGAGA TCGAACAGGA TGAGGTCAGT GGCATGTATG TTCTGTTCGC TACGGAGCCT
GCAAGGGTTT TGCTGTATCG GCCTCTGTAC AACGAAACGC CTCTGCTCGA GTTTGCCAGC
CTGGACCTGA TGATGGCTGC AATCCGCAGG CCCGGGCCGT TGCAGGACAG CGTCCTTGAG
TGGATGTCGC CTGCCTCGCG AGCCGTCTAC GCGTATGGCG GCTTTTACGA GCCGCATTGG
CCAGGGCCTA TCCTGAACAC CCAGCTACTG CCTGAGCGAG GGCACCCGCC AACCTTTGCA
GCGCAGTTCT GGCGCAATGA TGTTGATGTG AAACTCTATA TGGCCAATCG CAACCTGCTG
GTGGAGCTGG CTGACCGCGA ATCGGTTTCC AACGCCGAGA GTCGCTGGGC GATTCTCGTT
CGGGGGGCTT GGCTGTTGTT CGATGTTGTG ACGTTGATGC TGCGTGGGCC AGTGGCCGGC
GTTGCCTGGC TGGTACAGGC CATTTCCGGG TTGCACAACG ACCTTGCGGC CTTGCGAGAT
GGCAGCGCGT TCGAGCGCAG CGCAGCTGTG GTCGACTTAT TGCTCAACGC TTGCATGGCC
TTGATGCATT TGCGTCTACC GCAGTTACCC CTAGGCGAGC CTGTACAGAA CATTCCCCGT
CGGGGCGCAA TGCCCGCATG GGGTGGCGCA GAAGCACTGG TGGTTCCCGT ACAAGGCAAG
GTCGGTGTTC CGGGAGGGCT GGCGCAACAT GGCTCGACCC GGCTGGATTT TTCCTGGCGC
GGCGCACAGG GGTTCAATGT GCTCTCGCCC CAGCAGCGCA AGGTGGTGTC CGGCATGCGC
GTCGAGCAAT CGCTGGAAGG CCTGGAACCG CTTGCAGCGG GGCCTGGACG CGGGTTGTAC
CGCGTTGGTG AGCACTATTA CCTTACGCTG GGCGACGGTG TATATCGGGC CACCTTTGAA
GAACAAGGTT TGCGTATGGT CGGGGCCGAC GGTGTCATGG GGCCTTGGTT GGCGTTCGAG
CATGGACAAT GGCGTGTCGA TCGTGGCTTG CGCTTGCGAG GCGGCATGCC ACGCAGTCGC
CTTGAAGCCC TGAAAGAGGA AAACCGCAAG AAAGTCGAGC AACTCAAGAG CGAAGAATCG
GTACTGGCCA ACCAGCATAA TGCGCTGGCC GAAACCCTGA ACAGGCATCG CGACCTGCTC
AATGAAAAGG ACAAGCGCAT CGCAGTGCTG GAAGCGGTGA CTGAACCGGA CGAGCTGACG
ACTCGCGAGC TTGAGTTGAC CCGGCGTCTG CGCAAGCAGA TCCATTTGAA AATCATCTAC
GAAGTCAAAG GCCTGGCTGA GAGCTCACTC AAGCATGAGC AGGTGATCAA CAGCCTGTTC
AATATGCGCC ACGAAGATTC CGCCTACAGC ATTGTCGTCG CAGGTCAGCG CAGCCTGATC
CGTCAGAGCT TGATCGAAAA TATCTCAGTC TTCTACAACG AGATGGCCAA GATCATCAAT
GCAGAGGACC TGGCAAACCT CGCCGAGCAG GTTGTCATCC ACCCTGAGAG CGAGGAGGAA
ATCAGCCAGT ACAAACACTT TCGCTCTGTA CTGGAGGAGG TCATCCAATG GGAGGTGGAT
CTGGTTGACA TGTCCCGGCT GCTTGACGCG CTACTCGAAG AGACCCTCAA AGACGACACT
TTCGTGTTCA AGGACGATGA CACGCAGGAG CGCATCAACA AAGATAACGA GCTCAAGGGC
ACCATCGAGG CGCGGCGCTT GTCGGCCATC GACCTCGATT TTCGTCTGCT TCAAGACCTG
GCCGAAGCCA GCCTGGAAAG GCTGGCCGAT GTTGAGGAGC GGGTTTTATC GCAATACCTC
GATTACCTGG CCGGTGACAG CCTGAAAAGT GCAGGCAACG CGCATGGCGA CCTGGCAGGA
AGTGAGCTGT CGCTGGCTGA ACGGATCGAG GTACTGAGCG GCATCCTGGA GGGCTACGAG
GAGGCTGCGG CAATGGCCGA CTATCTGGGC AGTGTGGGGG GCGCGGCTAT CAGGCAGGAG
GCGCTGCAAC TGTACAAGAA AACCTTGCAC GGATTGCAGC GCGCTGCTCA AGGTGACCTC
GCCCAGGCAG TGCGAGAGCA GGAACTCTGC GAGCCCGCCC CACCGCGTCC AACGGTCTAT
GCCCCACGCG GTGGGCGGCG CAAGCTGGTC AGGACTCAGC GCGGGCGCAA AGTTCTCGCT
CAGGAAGTCG AGGTAGATGG TGTCGCCATC GTCCAGCAAC GTGATGAGCG TACTCAGCAT
GTACTGAAGA CCTTCCACCA GCGCGGCAGC GAGTGGGTCG AGGATGTGCC GCAACCCGCT
GAGTCAGAGC CGCCATTCTC CCCGCTGGAA CCCCGCCTGG CGCGAAAGCG TGCACAGGCC
CTGCTTGCGG AGGTCGAGCG GATCAACAAG CTGGCCAGAA GTTTCTTTCA GGCAGAGCAG
CCCAATAGTC TGGCCACGGT TGTCGACGGG CACCTGGAAA AACTGCGTCA TGCCCTGAGC
ACGTTGCCAA GGATGAGCCC CGAAGATGCC TTGTTCGAGA ATCTGGGTGA GGCCATCGAG
CGTTTGCAGG CAACCCGCCG AGACCTGTTG ACCGGCATCT ATCTGTCCAC CGACCACCCC
GACGCACGGA GCCTCAAGTT TCTGCTCGAC AACAACCAGG TCACTGTCCA GCGCGCTGGG
CCACGCAAGG CATTGGCAGC AGGTGATTAC CTGGATGTCT ACGAGGTCAG GCGCCTGCCG
CGGGCCGGCC AGGGTCAGGG CGATGGGCTG TGGGAGGCAC ACTTTCACTA CCCGGACATC
GGCACTCCGG CGCGGCAGTT CAGCAAAGGC CACCTGAAAC TGTGGGCACA GCGCAAACTG
GGGCGCCTGG CGCAGCTGCG GGCTGCCACC AGCGGCGAAG ACCTGGTCGC TATTTACCGG
GGAGATTTAC GCCTGAACCA GGTGGAGGGG CTGATCCCCT TTGAATGA
|
|---|
| Protein sequence | MPIQPSPVPD FRRAVATEFL SRPTLRSVLS QQVLELLVPC HATLAGAGLP DAESLILNIP
AHIASGPQTY DAWTPRPLLE VMLEALHARQ PLASLGADGG DFLLAVREPW FLRDQAGNPL
PSGAISIGAQ LAELDDLLLL LADSFCQAQV DFWKAPGSQG VSRDLWLQHL LKRVLLHNLP
LQGLDEQQRQ CLLSLLKNHG STPSVFLVQV QLDKDVQWLP NLLVRGEWDE REVFLWCAPS
SLVRAFSSLD LFAKALRDEL AERQRFESMA WHRYELEGDV FAQQSSLLLE IMLDDIERLR
YAQLPNCSLL ERDFAALSDP ARWFIEGYGQ ASGAQIALPP GLRHSSAANG FAYQRGVFEL
ALAQAQSEGS GALEDVLDLR SYTRQVLRAQ MLADFPVEAN YFSDDLDLQL TINAGWPGGA
GVGPGDSTVE HRSMTLTEFA IGNLWSLQNA QLTAVTHREN QLIMDWMNAD YVKSLVQRVD
IGKHYPTYVA RKLDDPATQA ERIKRFGREW RCSLLFSALY ARLQGELSDA GLQCVTDFCH
GYLDPQLPAL MLMPLAFRRE AGEIEQDEVS GMYVLFATEP ARVLLYRPLY NETPLLEFAS
LDLMMAAIRR PGPLQDSVLE WMSPASRAVY AYGGFYEPHW PGPILNTQLL PERGHPPTFA
AQFWRNDVDV KLYMANRNLL VELADRESVS NAESRWAILV RGAWLLFDVV TLMLRGPVAG
VAWLVQAISG LHNDLAALRD GSAFERSAAV VDLLLNACMA LMHLRLPQLP LGEPVQNIPR
RGAMPAWGGA EALVVPVQGK VGVPGGLAQH GSTRLDFSWR GAQGFNVLSP QQRKVVSGMR
VEQSLEGLEP LAAGPGRGLY RVGEHYYLTL GDGVYRATFE EQGLRMVGAD GVMGPWLAFE
HGQWRVDRGL RLRGGMPRSR LEALKEENRK KVEQLKSEES VLANQHNALA ETLNRHRDLL
NEKDKRIAVL EAVTEPDELT TRELELTRRL RKQIHLKIIY EVKGLAESSL KHEQVINSLF
NMRHEDSAYS IVVAGQRSLI RQSLIENISV FYNEMAKIIN AEDLANLAEQ VVIHPESEEE
ISQYKHFRSV LEEVIQWEVD LVDMSRLLDA LLEETLKDDT FVFKDDDTQE RINKDNELKG
TIEARRLSAI DLDFRLLQDL AEASLERLAD VEERVLSQYL DYLAGDSLKS AGNAHGDLAG
SELSLAERIE VLSGILEGYE EAAAMADYLG SVGGAAIRQE ALQLYKKTLH GLQRAAQGDL
AQAVREQELC EPAPPRPTVY APRGGRRKLV RTQRGRKVLA QEVEVDGVAI VQQRDERTQH
VLKTFHQRGS EWVEDVPQPA ESEPPFSPLE PRLARKRAQA LLAEVERINK LARSFFQAEQ
PNSLATVVDG HLEKLRHALS TLPRMSPEDA LFENLGEAIE RLQATRRDLL TGIYLSTDHP
DARSLKFLLD NNQVTVQRAG PRKALAAGDY LDVYEVRRLP RAGQGQGDGL WEAHFHYPDI
GTPARQFSKG HLKLWAQRKL GRLAQLRAAT SGEDLVAIYR GDLRLNQVEG LIPFE
|
|---|
| |