| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_5244 |
|---|
| Symbol | |
|---|
| ID | 5873058 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | + |
|---|
| Start bp | 5859720 |
|---|
| End bp | 5861096 |
|---|
| Gene Length | 1377 bp |
|---|
| Protein Length | 458 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 641550380 |
|---|
| Product | glutamate--putrescine ligase |
|---|
| Protein accession | YP_001671462 |
|---|
| Protein GI | 167036231 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0174] Glutamine synthetase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 0.792573 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 44 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCGGTAC CCCCGCGTGC CGTTCAGCTT AACGAAGCGA ACGCGTTCCT TAAGGAACAT
CCTGAGGTTC TCTACGTTGA CCTTCTGATT GCAGATATGA ATGGTGTGGT GCGTGGCAAG
CGCATTGAGC GCACCAGCCT CCACAAGGTT TACGAGAAAG GCATCAACCT GCCGGCCTCC
CTCTTCGCCC TGGACATCAA CGGTTCCACC GTCGAAAGTA CCGGGCTGGG CCTGGACATC
GGCGATGCTG ACCGCATCTG CTATCCAATC CCCGACACGC TCTGTAACGA GCCGTGGCAA
AAACGCCCCA CCGCCCAGCT GCTGATGACC ATGCACGAAC TGGAAGGCGA GCCATTCTTC
GCCGACCCAC GCGAAGTGCT GCGTCAGGTG GTGAGCAAGT TCGATGAATT GGGCCTGACT
ATCTGCGCCG CATTCGAACT GGAGTTCTAC CTGATCGACC AGGAGAACGT GAACGGCCGC
CCGCAGCCAC CACGCTCGCC AATTTCGGGT AAGCGCCCGC AGTCGACCCA GGTGTACCTG
ATCGACGACC TCGACGAATA TGCCGACTGC CTGCAGGACA TCCTCGAAGG CGCGAAAGAG
CAAGGCATCC CAGCCGACGC CATCGTCAAG GAAAGCGCCC CGGCGCAGTT CGAAGTCAAC
CTGCACCACG TGGCCGACCC GCTCAAGGCC TGCGACTACG CGGTACTGCT CAAGCGGTTG
ATCAAGAACA TCGCCTACGA CCATGAAATG GACACCACCT TCATGGCCAA GCCCTACCCG
GGCCAGGCAG GCAACGGCCT GCATGTACAC ATTTCCGTGC TGGACAAAGA TGGCAACAAC
ATCTTCACCA GCGAGGATCC CGAGCAGAAC GCCGCGCTAC GTCATGCTGT CGGCGGTGTG
CTCGAGACCC TGCCCGCGTC CATGGCGTTC CTTTGCCCGA ACGTCAACTC GTACCGCCGC
TTTGGCGCAC AGTTCTACGT GCCGAACGCG CCAAGCTGGG GCCTGGACAA CCGCACTGTC
GCACTGCGCG TGCCAACCGG CTCGGCGGAC GCTGTACGTC TCGAGCACCG CGTGGCCGGT
GCCGACGCCA ACCCGTACCT GATGATGGCT GCCGTGCTGG CAGGCGTGCA CCATGGCCTG
ACCAACAAGA TCGAGCCAGG CGCGCCGATC GAAGGCAACT CGTACGAGCA GCTGGAGCAG
AGCCTGCCGA ACAACCTGCG TGATGCCCTG CGCGAGTTGG ACGACAGCGA GATCCTCAAC
AAGTACATCG ATCCTAAGTA CATCGACATC TTTGTCGCGT GCAAGGAGAG CGAGCTGGAG
GAGTTCGAAC ACTCGATCTC CGACCTCGAG TACAACTGGT ACCTGCATAC CGTGTAA
|
|---|
| Protein sequence | MSVPPRAVQL NEANAFLKEH PEVLYVDLLI ADMNGVVRGK RIERTSLHKV YEKGINLPAS
LFALDINGST VESTGLGLDI GDADRICYPI PDTLCNEPWQ KRPTAQLLMT MHELEGEPFF
ADPREVLRQV VSKFDELGLT ICAAFELEFY LIDQENVNGR PQPPRSPISG KRPQSTQVYL
IDDLDEYADC LQDILEGAKE QGIPADAIVK ESAPAQFEVN LHHVADPLKA CDYAVLLKRL
IKNIAYDHEM DTTFMAKPYP GQAGNGLHVH ISVLDKDGNN IFTSEDPEQN AALRHAVGGV
LETLPASMAF LCPNVNSYRR FGAQFYVPNA PSWGLDNRTV ALRVPTGSAD AVRLEHRVAG
ADANPYLMMA AVLAGVHHGL TNKIEPGAPI EGNSYEQLEQ SLPNNLRDAL RELDDSEILN
KYIDPKYIDI FVACKESELE EFEHSISDLE YNWYLHTV
|
|---|
| |