| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_5186 |
|---|
| Symbol | |
|---|
| ID | 5873000 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | + |
|---|
| Start bp | 5798651 |
|---|
| End bp | 5800015 |
|---|
| Gene Length | 1365 bp |
|---|
| Protein Length | 454 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 641550322 |
|---|
| Product | GTP-binding protein HSR1-related |
|---|
| Protein accession | YP_001671404 |
|---|
| Protein GI | 167036173 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0486] Predicted GTPase |
|---|
| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 0.437864 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 45 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACTGAGC CACTTAAACT GGCCGTGGTC GGCCACACCA ACGTCGGCAA GACTTCGTTG
CTGCGCACCC TGACCCGCGA CGTGGGCTTT GGTGAGGTAT CCCATCGCCC CAGCACCACT
CGCCATGTCG AGGGTGCGCG GCTGTCGGTG GACGGCGAAC CCTTGCTGGA GCTGTACGAC
ACCCCAGGCC TGGAAGATGC CATCGCCCTG CTCGACTACC TCGAACGCTT GGAGCGCCCT
GGCGAGCGTC TGGACGGCCC GGCCCGCCTG GAGCGTTTTC TGCAGGGCAG CGAAGCGCGC
CAGCGTTTCG AGCAAGAAGC CAAAGTGCTG CGTCAACTGC AGGCCAGCAA TGCCGGCCTG
TATGTGATCG ATGCGCGCGA GCCGGTGCTG GCCAAATACC GCGACGAACT GGAAGTACTC
GCCAGCTGCG GCAAGCCGTT GCTGCCGGTG CTCAACTTCG TCGCCAGCCA CCAGCACCGC
GAGCCGCAAT GGCGTGAAGC CCTTGCCCGG CTTGGCCTTC ACGCGTTGGT GCGGTTCGAC
AGCGTGGCCC CGCCCGAGGA TGGCGAGCGC CGTTTGTACG AGAGCCTTGC CCTACTGCTG
GAGGACGCCC GCCCAGCCCT GCAGCGGCTG ATCGACGACC AGCAAGCGCA ACGCCTGGCC
CGCCGGCACA GTGGCAAGCG GCTGATTGCC GAACTGCTGC TGGACTGCGC CGCCTGCCGG
CGCAGCGTCG AAGCCGAACC GGCGGCCGAA GCCCGGGCGA TGGAAGCCCT GCGTCAAGAC
ATACGCCAAC GTGAGCAGCG TTGCGTTGAA GCCTTGCTCA AGCTGTACGC ATTCCGCCGC
GAGGATGCCC ATGCCAGCGA CCTGCCGTTG CTCGATGGCC GCTGGGGCGA TGACCTGTTC
AACCCCGAAA CCCTGAAGTT GCTGGGCGTG CGCCTGGGCA GCGGTGTGGC AGCGGGTGCG
GCAGCGGGCG CTGGGGTGGA TCTACTGGTC GGCGGCCTTA CCTTGGGTGC GGCGGCGTTG
GCTGGGGCGA TTGCCGGCGG CGCGCTACAG ACGGCGCGCA ACTATGGTTC GCGGTTGATG
GGCAAGCTCA AGGGCAAACG CGAGCTGACC GTGGACGATA CCGTGTTGCG CTTGCTGGCT
CTGCGTCAGC AGCAGTTGAT GATGGCGCTG GAGAGCCGCG GGCATGCGGC ACAGGACAGT
ATTCGTCTGG GTGAGGTGGA TGAGAAAGCC TGGCGCGAGG GCAAGTTGCC GGAGGCACTG
GTGAAAGCAC GAGCGCACCC CCAGTGGTCC ACGCTCAATC CTGGGGCGAA GTTGAACCAG
GCTGAACGGC AAGAACAGCT TGAGGCGCTG GTTACTCAGA TCTGA
|
|---|
| Protein sequence | MTEPLKLAVV GHTNVGKTSL LRTLTRDVGF GEVSHRPSTT RHVEGARLSV DGEPLLELYD
TPGLEDAIAL LDYLERLERP GERLDGPARL ERFLQGSEAR QRFEQEAKVL RQLQASNAGL
YVIDAREPVL AKYRDELEVL ASCGKPLLPV LNFVASHQHR EPQWREALAR LGLHALVRFD
SVAPPEDGER RLYESLALLL EDARPALQRL IDDQQAQRLA RRHSGKRLIA ELLLDCAACR
RSVEAEPAAE ARAMEALRQD IRQREQRCVE ALLKLYAFRR EDAHASDLPL LDGRWGDDLF
NPETLKLLGV RLGSGVAAGA AAGAGVDLLV GGLTLGAAAL AGAIAGGALQ TARNYGSRLM
GKLKGKRELT VDDTVLRLLA LRQQQLMMAL ESRGHAAQDS IRLGEVDEKA WREGKLPEAL
VKARAHPQWS TLNPGAKLNQ AERQEQLEAL VTQI
|
|---|
| |