Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputGB1_5172 |
Symbol | |
ID | 5872987 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida GB-1 |
Kingdom | Bacteria |
Replicon accession | NC_010322 |
Strand | + |
Start bp | 5784311 |
End bp | 5785909 |
Gene Length | 1599 bp |
Protein Length | 532 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 641550310 |
Product | glucose-methanol-choline oxidoreductase |
Protein accession | YP_001671392 |
Protein GI | 167036161 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG2303] Choline dehydrogenase and related flavoproteins |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 37 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 42 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCTGTAC CCGACCCGTT TCGCCAAGGC CTCGAACGCG GCTGGATCAC CCACGACGCC TCACGCCTGG AGCACGATCT GAGCCTGGAG GCCGACATTG CCGTGATCGG CAGTGGCGCC GGTGGTGCCA CCAGCGCGCA GATGCTCAGT GCTGCCGGTT TCAAGGTACT GCTGATCGAA GAAGGCCCGC TGAAGACCAG CAGCGATTTC CACCTGCTGG AGAGCGAAGC CTACGCCAGC CTGTACCAGG AAGGCCTGGG GCGCATGAGC AAGGATGGCG CCATTACCAT CCTGCAGGGC CGCGCCGTGG GCGGTACCAC ACTGGTGAAC TGGACCTCGA GCTTTCGTAC CCCGCCGCAA ACCCTGACGC ATTGGGCTTC GGCCCACGGC GTGAGCGGCT TGGGCGAGGA GGAGCTGCGC CCCTGGTTCG AGCGCATGGA GCAGGAGCTG GGCATAACGC CCTGGGCTTT GCCGCCAAAT GCCAATAATG ACGTACTGCG CCGTGGCTGC GAACAGCTCG GCTACCGCTG GGCGGTGATC CCGCGCAATG TGCGCGGTTG CTGGAACCTG GGCTACTGCG GCATGGGCTG CCCGGTAAAC GCCAAGCAAT CGATGCTGGT AACCCGTATT CCTGCCACCC TCGAGCAAGG CGGTGAGCTG CTGTACCTGG CCCGGGCCGA GCGTTTCACG CACAACGGAG CGCGCGTCCA GAGCCTGACC TGCCAGGCCC TGGACGCCCA AGGCATACAG CCCACCGGCA AGCAGGTCAG CGTGCGGGCA CGCCATTACC TGCTCGCCGG GGGTGGCATC AACAGCCCGG CCCTGCTGCT GCGCTCTGCC GCGCCCGACC CGCATGGCCG CCTGGGCAAG CGCACCTTCC TGCACCTGGT CAACTTCAGC GCGGCACGCT TCAGCGAGCG TATCGACCCC TACTATGGCG CCCCGCAGTC GATCTACAGC GACCACTTCC AGTGGCAAGG CGGTGCGGAC GGCCCGGTTG GCTACAAGCT GGAAGTACCG CCGCTGCACC CGGCCCTGGC CAGCACCCTG CTGGGCGGGT ACGGCCACGA GAATGCCCAG CGCATGGCCG AGCTGCCGCA TACCCATGTG ATGCTGGCGC TGCTGCGCGA CGGCTTTCAC CCCGAAAGCC AAGGTGGGGC GGTGGAACTG CGCGGGGATG GCTCGCCCGT GCTCGATTAC CCGGTCACCG ACTACCTGCG TGACGGCTTG CGCCGGGCCT ACCGCAGCAT GGCGCAAGTC CAGTTCGCCG CTGGCGCCAT TCAGGTAACC CCCGTGCACA GCGACGCCAG CGCCGCATCC AACCTGGAGC AGGCCCTGGC CATGATCGAT ACGCTGCGCC TGGAGCCCTT CCGCACGCGC CTGGGCAGCG CCCATGTGAT GGGAGGCTGT GCCCTCGGCG AAGACCCGCG CCAGGCGGTG TGCGACAGCC TGGGCCGTCA TCACCAGCTG GAAAACCTGT CGATTCACGA CGGCTCGCTG TTCCCCACCA GCATCGGTGC CAACCCACAG CTGTCGGTGT ATGCCATCAG CGCCAAGCTC AGCGAAGCGC TGGTCGCCCG CCTGGCACAC AGCGCATGA
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Protein sequence | MPVPDPFRQG LERGWITHDA SRLEHDLSLE ADIAVIGSGA GGATSAQMLS AAGFKVLLIE EGPLKTSSDF HLLESEAYAS LYQEGLGRMS KDGAITILQG RAVGGTTLVN WTSSFRTPPQ TLTHWASAHG VSGLGEEELR PWFERMEQEL GITPWALPPN ANNDVLRRGC EQLGYRWAVI PRNVRGCWNL GYCGMGCPVN AKQSMLVTRI PATLEQGGEL LYLARAERFT HNGARVQSLT CQALDAQGIQ PTGKQVSVRA RHYLLAGGGI NSPALLLRSA APDPHGRLGK RTFLHLVNFS AARFSERIDP YYGAPQSIYS DHFQWQGGAD GPVGYKLEVP PLHPALASTL LGGYGHENAQ RMAELPHTHV MLALLRDGFH PESQGGAVEL RGDGSPVLDY PVTDYLRDGL RRAYRSMAQV QFAAGAIQVT PVHSDASAAS NLEQALAMID TLRLEPFRTR LGSAHVMGGC ALGEDPRQAV CDSLGRHHQL ENLSIHDGSL FPTSIGANPQ LSVYAISAKL SEALVARLAH SA
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