Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputGB1_5014 |
Symbol | |
ID | 5872829 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida GB-1 |
Kingdom | Bacteria |
Replicon accession | NC_010322 |
Strand | - |
Start bp | 5599798 |
End bp | 5601795 |
Gene Length | 1998 bp |
Protein Length | 665 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 641550152 |
Product | transketolase |
Protein accession | YP_001671234 |
Protein GI | 167036003 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG0021] Transketolase |
TIGRFAM ID | [TIGR00232] transketolase, bacterial and yeast |
| ![](https://exploration.weizmann.ac.il/pandatox/images_new/ic_cp.jpg)
![](https://exploration.weizmann.ac.il/pandatox/images_new/ic_hh.jpg)
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Plasmid Coverage information |
Num covering plasmid clones | 32 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 29 |
Fosmid unclonability p-value | 0.16096 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCCAGCC GTCGTGAACG TGCCAACGCC ATTCGTGCCC TCAGCATGGA TGCCGTGCAA AAGGCCAACA GCGGCCACCC AGGTGCCCCC ATGGGCATGG CGGATATCGC CGAAGTGCTT TGGCGCGACT ATCTGAAGCA CAACCCGAGC AACCCGAGCT TCGCCGACCG TGACCGCTTC GTGCTGTCCA ACGGCCACGG CTCGATGCTG ATCTACTCGC TGCTGCACCT GACCGGCTAC GACGTCACCA TCGATGACAT CAAAGGCTTC CGCCAGCTGC ACAGCCGCAC CCCGGGCCAC CCGGAATACG GCTACACCCC AGGCGTCGAG ACCACCACTG GCCCGCTCGG CCAAGGTATC GCCAATGCCG TGGGCTTCGC CCTGGCCGAA AAAGTGCTGG CTGCCCAGTT CAACCGTGAC GGCCACAACA TCGTCGACCA CAACACCTAC GTGTTCCTCG GCGACGGCTG CATGATGGAA GGTATCTCCC ACGAAGTCGC CTCGCTGGCC GGCACCCTGG GCCTGAACAA GCTGATCGCC TTCTACGACG ACAACGGCAT TTCCATCGAC GGCGAAGTGC ACGGCTGGTT CACCGACAAC ACCCCGGCGC GCTTCGAGGC GTACAACTGG CAGGTGATCC GCAACGTCGA CGGCCACGAT GCCGAAGAAA TCAAGATGGC CATCGAAACG GCGCGCAAAA GCGACCGTCC GACCCTGATC TGCTGCAAGA CCATCATCGG TTTCGGTTCG CCGAACAAGC AGGGCAAGGA AGACTGCCAC GGTGCCCCGC TGGGCAACGA CGAAATCGCC CTGGCCCGCA AGGAACTGAA CTGGAACCAC GGCCCGTTCG AAATCCCAGC CGACATTTAT GCCGAGTGGG ATGCCAAGGC CGCCGGTGCC AAGGCCGAAG CCGACTGGAA CCAGCGCTTC GACGCCTACG CCAAGGCCTA CCCGGAGCTG GCTGCCGAGT TCAAGCGCCG TGACAGCGGC GAGCTGCCGG CCGACTTCAG CGAGAAGGCC CAGGCCTACA TCAACGAAGT GGCTGCCAAA GGCGAAACCA TCGCCAGCCG CAAAGCCAGC CAGAACGCCC TGAACGCTTT CGGCCCGCTG CTGCCCGAGT TCCTCGGCGG CTCGGCTGAC CTGGCCGGCT CCAACCTGAC CCTGTGGAAA GGTTGCAAGG GTGTCGAAGC CAATGACGCC AGCGGCAACT ACGTGTTCTA CGGCGTGCGC GAGTTCGGCA TGACCGCCAT CATGAACGGC GTTGCCCTGC ACGGTGGCCT GGTGCCTTAC GGCGCGACCT TCCTGATGTT CATGGAATAC GCCCGCAACG CCGTGCGCAT GTCGGCGCTG ATGAAGCAGC GCGTGATCCA CGTGTACACC CACGACTCCA TCGGCCTGGG CGAAGACGGC CCGACTCACC AGCCGATCGA GCAGCTGACC AGCCTGCGCA GCACGCCGAA CCTGGACACC TGGCGCCCAG CCGACGCGGT GGAGTCCGCC GTGTCCTGGA AAAACGCCCT GGAGCGCAAG GACGGCCCTT CGGCGCTGAT CTTCTCGCGT CAGAACCTGC AGCACCAGGA CCGCAACGCC CAGCAGATCG CCGACATCAG CCGTGGTGGC TACGTGCTCA AGGACTGCGC TGGCGAGCCT GAGCTGATCC TGATCGCTAC CGGTTCGGAA GTGGGCCTGG CTGTTCAGGC CTTCGACAAG CTGACCGAGC AAGGCCGCAA GGCGCGCGTG GTCTCCATGC CGTGCACCAG CGTGTTCGAT GCCCAGGACG CTGCCTACAA GCAGTCCGTG CTGCCGCTGG AAGTCGGTGC GCGCATCGCC ATCGAAGCCG CCCACGCCGA CTTCTGGTAC AAGTACGTCG GCCTGGAAGG TCGTATCATT GGCATGACCA CCTACGGTGA GTCGGCGCCA GCTTCGGCAC TGTTCGAAGA GTTTGGTTTC ACCCTGGAGA ACATCCTGGG TACTGCCGAA GAGCTGCTGG AAGACTGA
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Protein sequence | MPSRRERANA IRALSMDAVQ KANSGHPGAP MGMADIAEVL WRDYLKHNPS NPSFADRDRF VLSNGHGSML IYSLLHLTGY DVTIDDIKGF RQLHSRTPGH PEYGYTPGVE TTTGPLGQGI ANAVGFALAE KVLAAQFNRD GHNIVDHNTY VFLGDGCMME GISHEVASLA GTLGLNKLIA FYDDNGISID GEVHGWFTDN TPARFEAYNW QVIRNVDGHD AEEIKMAIET ARKSDRPTLI CCKTIIGFGS PNKQGKEDCH GAPLGNDEIA LARKELNWNH GPFEIPADIY AEWDAKAAGA KAEADWNQRF DAYAKAYPEL AAEFKRRDSG ELPADFSEKA QAYINEVAAK GETIASRKAS QNALNAFGPL LPEFLGGSAD LAGSNLTLWK GCKGVEANDA SGNYVFYGVR EFGMTAIMNG VALHGGLVPY GATFLMFMEY ARNAVRMSAL MKQRVIHVYT HDSIGLGEDG PTHQPIEQLT SLRSTPNLDT WRPADAVESA VSWKNALERK DGPSALIFSR QNLQHQDRNA QQIADISRGG YVLKDCAGEP ELILIATGSE VGLAVQAFDK LTEQGRKARV VSMPCTSVFD AQDAAYKQSV LPLEVGARIA IEAAHADFWY KYVGLEGRII GMTTYGESAP ASALFEEFGF TLENILGTAE ELLED
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