| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_4978 |
|---|
| Symbol | |
|---|
| ID | 5872793 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | - |
|---|
| Start bp | 5554578 |
|---|
| End bp | 5555471 |
|---|
| Gene Length | 894 bp |
|---|
| Protein Length | 297 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 641550116 |
|---|
| Product | LysR family transcriptional regulator |
|---|
| Protein accession | YP_001671198 |
|---|
| Protein GI | 167035967 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 0.403345 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 42 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATGGCTG AGCAATGGAG TCTGGAGCAG TTGCGTATTT TTTTGCGCGT CGCCGAATTG
CGCTCGTTTT CTGCCGTGGC CCGCGAACAA CGCAAGGCCC AATCGGCCAT CAGCAATGCC
ATCGCCCTGC TGGAAGCAGA CTTGGGTGTC ACGTTGTTCG AGCGCAGCAG CGGCCGGCAA
CCAAAACTGA CCGAAAGTGG CAGCGCGTTG CTGGAAGACG CCCGCGAACT GCTACGCCAG
TGCGAACACC TGGATGGTCG CGCCCTGGCC CTGATGCGTG GGCAGGAGGC CTTGCTGCGG
GTTGCTCAGG ATGAGGCCAT GCCTTATCAA CCGGTGATCG ACAGCCTCGA CGAACTGGCC
AGCCGCTTCC CGTACCTGGA GGTACAACTG GCCAGCGGCG CCCAGGGCGA TGTAGCGCGC
AAGCTGGTTG AGCGCCGAGC CGATCTTGGG CTGTTCTTCC ACCATGAAAG CATCCCGTCT
TCGCTGGAGC GTCGCGTCCT GGGCAGCGTC GAAATGGTCA CGGTGTGCGC AGTCGGCCAC
CCGCTCGCGG GGCAAGGCCG GGCAACCCGC CAGCAACTGG CGCGCCACCG GCAATTACTC
ATCACCCCAC AGCAAAGTGG TTACCCTGGC GGCGAGGCAA TCAGCCCGCA GGTATGGCGT
GCCGACAGCT TCTACGCCAT GGCTGAACTG CTGATGCGCG GCCTGGGCTG GGCCTGGCTG
CCGCGGCACG TGGTGCAGTA CCCGACCTAC CAGGCGCACA TGGTCGAACT GGACAGTGAG
TGGCGCCCGC CGGCGCTGGT GGCGGAGCTG GCCTGGCGCC GCGATGAGCC ACTGGGGCCC
GCTGCGCAGT GGCTGGCCGA GCGCTTTGCA GTACACCTGC GTGCGATCGG GTAA
|
|---|
| Protein sequence | MMAEQWSLEQ LRIFLRVAEL RSFSAVAREQ RKAQSAISNA IALLEADLGV TLFERSSGRQ
PKLTESGSAL LEDARELLRQ CEHLDGRALA LMRGQEALLR VAQDEAMPYQ PVIDSLDELA
SRFPYLEVQL ASGAQGDVAR KLVERRADLG LFFHHESIPS SLERRVLGSV EMVTVCAVGH
PLAGQGRATR QQLARHRQLL ITPQQSGYPG GEAISPQVWR ADSFYAMAEL LMRGLGWAWL
PRHVVQYPTY QAHMVELDSE WRPPALVAEL AWRRDEPLGP AAQWLAERFA VHLRAIG
|
|---|
| |