Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputGB1_4975 |
Symbol | |
ID | 5872790 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida GB-1 |
Kingdom | Bacteria |
Replicon accession | NC_010322 |
Strand | - |
Start bp | 5549465 |
End bp | 5551345 |
Gene Length | 1881 bp |
Protein Length | 626 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 641550113 |
Product | thiamine biosynthesis protein ThiC |
Protein accession | YP_001671195 |
Protein GI | 167035964 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG0422] Thiamine biosynthesis protein ThiC |
TIGRFAM ID | [TIGR00190] thiamine biosynthesis protein ThiC |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 27 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 39 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGACCAAAC AAGAAAAAGC GATCAACCTC AGCGAATCGG CACAAGTCGA TCAGCAGTCC GTGCAACCGT TCCCGCGTTC GCGCAAGGTC TATGTCGAAG GCTCGCGCCC GGACATCCGT GTACCCATGC GTGAAATCAG CCTGGATGAC ACCCCTACCG ATTTTGGTGG CGAGACCAAT GCCCCGGTGC TGGTGTACGA CACCTCCGGC CCATACACCG ACCCCAACGT GATCATCGAC GTGCGCAAAG GCCTGGCCGA CGTGCGTTCA GCGTGGATCG ACGCCCGTGG TGACACCGAG CGCCTGGACG GCCTGAGCTC CGACTTCGGC CAGCAGCGCC TGAACGACGC CGAGCTGGCC AAGCTGCGTT TCGCCCATGT GCGCAACCCG CGTCGTGCCA AGGCGGGTGC CAACGTCTCG CAGATGCACT ATGCCCGCCG GGGCATCATC ACCGCCGAGA TGGAATACGT GGCCATCCGC GAAAACATGA AGCTGCAGGA GGCCCGCGCA GCTGGCCTGC TCAAAGAGCA GCATGCTGGC CACAGCTTCG GTGCCAACAT CCCGAAAGAA ATCACCCCCG AATTCGTCCG CCAGGAAATC GCCCGTGGCC GCGCGATCAT TCCGGCCAAC ATCAACCACC CGGAAGTTGA GCCGATGATC ATCGGCCGCA ATTTCCTGGT GAAGATCAAC GGCAACATCG GCAACAGCGC CTTGGGGTCC TCGATCGAGG AAGAAGTGGC CAAGCTGACC TGGGGCATCC GCTGGGGCTC GGACACGGTC ATGGACCTGT CCACCGGCAA GCACATTCAC GAAACCCGCG AGTGGATCAT CCGCAACTCG CCGGTGCCGA TCGGCACCGT GCCGATCTAT CAGGCCCTGG AAAAGGTCAA CGGCGTGGCC GAGGACCTGA TCTGGGAGCT GTTCCGCGAC ACACTGATCG AGCAGGCCGA GCAGGGGGTG GACTACTTCA CTATCCACGC CGGTGTGCTG CTGCGTTATG TGCCGCTGAC CGCCAAGCGT GTCACCGGTA TCGTCAGCCG TGGGGGCTCG ATCATGGCCA AGTGGTGCCT GGCGCATCAC AAGGAAAACT TCCTGTACAC CCACTTCGAC GAAATCTGCG AAATCATGAA GGCCTACGAC GTCAGCTTCT CGCTGGGCGA CGGCCTGCGC CCTGGCTCGA TTGCCGACGC CAACGACGCC GCGCAGTTCG GTGAGCTGGA AACCCTCGGC GAACTGACCA AGATTGCCTG GAAGCACGAC GTGCAATGCA TGATCGAAGG CCCTGGCCAC GTGCCGATGC AGTTGATCAA AGAGAACATG GACAAGCAGC TGGAGTGCTG CGACGAAGCG CCGTTCTACA CCCTCGGCCC ACTGACCACC GACATTGCTC CGGGCTACGA CCACATCACT TCGGGTATTG GTGCGGCGAT GATCGGCTGG TTCGGTTGCG CCATGCTGTG CTACGTCACG CCCAAGGAAC ATTTGGGCCT GCCGAACAAA GACGACGTCA AGACCGGCAT CATCACCTAC AAGATCGCCG CGCATGCCGC CGACCTTGCC AAGGGCCACC CAGGTGCGCA GATTCGCGAC AACGCCCTGT CGAAGGCGCG TTTCGAGTTC CGTTGGGAAG ACCAGTTCAA CCTTGGCCTT GACCCGGACA CGGCCCGTGC CTTCCACGAC GAGACGCTGC CGAAGGAATC GGCCAAGGTC GCGCACTTCT GCTCGATGTG CGGGCCGAAG TTCTGCTCGA TGAAGATCAC CCAGGAAGTG CGTGAGTACG CCGCCAAGAT CGAGGCCGTG GATGTGACGG TCGAAGAAGG CATGCGTGAG CAGGCCGAGC GGTTCCGCCA GGAAGGCAGC CAGCTGTACC ACAAAGTGTA A
|
Protein sequence | MTKQEKAINL SESAQVDQQS VQPFPRSRKV YVEGSRPDIR VPMREISLDD TPTDFGGETN APVLVYDTSG PYTDPNVIID VRKGLADVRS AWIDARGDTE RLDGLSSDFG QQRLNDAELA KLRFAHVRNP RRAKAGANVS QMHYARRGII TAEMEYVAIR ENMKLQEARA AGLLKEQHAG HSFGANIPKE ITPEFVRQEI ARGRAIIPAN INHPEVEPMI IGRNFLVKIN GNIGNSALGS SIEEEVAKLT WGIRWGSDTV MDLSTGKHIH ETREWIIRNS PVPIGTVPIY QALEKVNGVA EDLIWELFRD TLIEQAEQGV DYFTIHAGVL LRYVPLTAKR VTGIVSRGGS IMAKWCLAHH KENFLYTHFD EICEIMKAYD VSFSLGDGLR PGSIADANDA AQFGELETLG ELTKIAWKHD VQCMIEGPGH VPMQLIKENM DKQLECCDEA PFYTLGPLTT DIAPGYDHIT SGIGAAMIGW FGCAMLCYVT PKEHLGLPNK DDVKTGIITY KIAAHAADLA KGHPGAQIRD NALSKARFEF RWEDQFNLGL DPDTARAFHD ETLPKESAKV AHFCSMCGPK FCSMKITQEV REYAAKIEAV DVTVEEGMRE QAERFRQEGS QLYHKV
|
| |