| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_4661 |
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| Symbol | |
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| ID | 5872469 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | + |
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| Start bp | 5199246 |
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| End bp | 5199734 |
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| Gene Length | 489 bp |
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| Protein Length | 162 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 641549794 |
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| Product | Hcp1 family type VI secretion system effector |
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| Protein accession | YP_001670883 |
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| Protein GI | 167035652 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3157] Hemolysin-coregulated protein (uncharacterized) |
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| TIGRFAM ID | [TIGR03344] type VI secretion system effector, Hcp1 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 0.222598 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 34 |
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| Fosmid unclonability p-value | 0.551408 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCTTTCG ATGCATATAT TCAGATTGAC CGTATTCCAG GCGAAGCACG GGACGAAAAA
TACAGTCAAT GGATTGAAGT ACTTAGCTAT GACTTTGGGG TCAGTCAAAG TACATCCGCC
ACTGCAAGCT CGGCTGGTGG TGCCACATCC GGCCGAACCT CCGTCACCAA CTTCACATTC
ACCAAATACC TCGACAGTGC CAGCTGCAAG CTGATGGAGG CCAGTTGTAC AGGGCAGCAT
CTCAAAGCGG TGAAGCTGGC ACTCTGTCGC GCCGGCGGTG ACAAGCTCAA GTATTACGAA
ATCATTCTGG AAGAAGTCAT CATTGCCGAG TACTCGCAGA GCGTCGACAC CGGTGTACCG
CTTGAAGTAG TACAGCTCAA CTACGGTCGA ATCAAGACCA CCTACACCCA GCAACGGCGC
ATCGATGGCG GCGGTGGCGG CAACATCGCC GGCGGCTGGG ACCGTATCGG CAATAAAAAA
TACGCGTGA
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| Protein sequence | MAFDAYIQID RIPGEARDEK YSQWIEVLSY DFGVSQSTSA TASSAGGATS GRTSVTNFTF
TKYLDSASCK LMEASCTGQH LKAVKLALCR AGGDKLKYYE IILEEVIIAE YSQSVDTGVP
LEVVQLNYGR IKTTYTQQRR IDGGGGGNIA GGWDRIGNKK YA
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