| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_4630 |
|---|
| Symbol | |
|---|
| ID | 5872438 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | - |
|---|
| Start bp | 5166758 |
|---|
| End bp | 5167477 |
|---|
| Gene Length | 720 bp |
|---|
| Protein Length | 239 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 641549763 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_001670852 |
|---|
| Protein GI | 167035621 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0300] Short-chain dehydrogenases of various substrate specificities |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 0.712696 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 43 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGTGTTC TGGTAGTCGG CGCCAGTAAA GGCCTGGGCA AGGCTTTCAT GGAAGGGTTG
GGCAAACCCG GCGATACGTT GATTGGGGTG TCGCGCAGCA AACCCGCGGC AGTGAATGTC
GGCAAGGGTA TTGACGCCCA GTGGATCGAG GCCGATCTAG GCCAGCCTGC CGCTGCAGTA
GAGTCGATAG CCCGAGTGCT GGCTGAGGGT GGCGTGGATA CGCTGATCTA TAACCTCGGC
CTGTGGGAGG CCGAAGCGTT CGAAGACCAC TACAGCTTCC TTGATGACTG TGACGCAGCG
CTGCAGCGCA TGGTCGACTG CAACATCACC GCCACCATCC TGCTGGTCAA ACGGCTGCTG
CCGCTGCTGC TCGAAAGCGA AAAACCACGG ATCATCCTGA CCGGTTCCAC TTCCGGCCTG
CCCCAAAGCG GTCGCCCAGA AGTGACCTTC GCTGCCTCCA AGTTCGGCCT GCGCGGCATC
GCCGAAGCAT TGCGTGAAGG CTATCGAGGG CAAGGCCTTG GGGTGACGTG CCTGAACCTT
GGGTACCTCA ATACCGAAGA CGGCCTGGAT GTGCCGGTGG AAGAGGCTGC CGCGCGTGGG
GAAGGGGGGC TGATACCGCT GCACGATGTG GTGCTGATGG TGCGCACGCT GCTGGAGCTT
TCGGCGGCCA GTTATGTGCG GGAGCTGACC TTGCCGGCGA TTGCCGATGA GCGGTTCTGA
|
|---|
| Protein sequence | MRVLVVGASK GLGKAFMEGL GKPGDTLIGV SRSKPAAVNV GKGIDAQWIE ADLGQPAAAV
ESIARVLAEG GVDTLIYNLG LWEAEAFEDH YSFLDDCDAA LQRMVDCNIT ATILLVKRLL
PLLLESEKPR IILTGSTSGL PQSGRPEVTF AASKFGLRGI AEALREGYRG QGLGVTCLNL
GYLNTEDGLD VPVEEAAARG EGGLIPLHDV VLMVRTLLEL SAASYVRELT LPAIADERF
|
|---|
| |