| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_4244 |
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| Symbol | |
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| ID | 5872048 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | + |
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| Start bp | 4747080 |
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| End bp | 4748360 |
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| Gene Length | 1281 bp |
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| Protein Length | 426 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 641549375 |
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| Product | TRAP dicarboxylate transporter, DctM subunit |
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| Protein accession | YP_001670468 |
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| Protein GI | 167035237 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component |
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| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 0.525518 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 47 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATGCGT TCATTCTGTT GGGCAGTTTC ATCATGCTCA TTCTGCTGGG CATGCCGGTG
GCCTATGCCC TGGGCCTGTC GGCGCTGATT GGCGCCTGGT GGATCGATAT CCCGCTGCAG
GCAATGATGA TCCAGGTGGC CAGTGGGGTT AACAAGTTCT CGCTGCTGGC GATTCCGTTC
TTCGTGCTGG CCGGCGCGAT CATGGCCGAA GGCGGTATGT CACGGCGGCT GGTGGCATTT
GCCGGAGTGC TGGTGGGCTT CGTGCGCGGC GGGCTGTCGC TGGTCAATAT CATGGCCTCG
ACCTTCTTCG GCGCGATTTC CGGCTCGTCG GTGGCCGACA CCGCCTCGGT GGGCTCGGTG
CTGATCCCAG AGATGGAGCG CAAGGGTTAC CCGCGCGAAT TCTCCACTGC CGTGACCGTC
AGCGGCTCGG TACAGGCGCT GCTGACCCCG CCCAGCCACA ACTCGGTGCT GTATTCGCTG
GCGGCGGGCG GCACGGTGTC GATTGCCTCG CTGTTCATGG CGGGAGTCAT GCCCGGTTTG
CTGCTGAGTG CGGTGATGAT GGGCCTGTGC CTGATCTTCG CCAAGAAGCG CAACTACCCC
AAGGGCGAAG TGATCCCGAT GCGCCAGGCG CTGAAAATCG CCGGTGAAGC GCTGTGGGGC
CTGATGGCCA TGGTCATTAT CCTTGGCGGC ATTTTGTCGG GCGTGTTCAC CGCTACCGAG
TCGGCGGCAG TGGCGGTAGT GTGGTCGTTC TTCGTGACCA TGTTCGTCTA CCGCGACTAC
AAGTGGCGCG ACCTGCCCAA GCTGATGCAT CGCACGGTGC GCACCATCTC GATCGTGATG
ATTCTGATCG GCTTTGCCGC CAGCTTTGGT TACGTGATGA CGCTGATGCA GATCCCGTCG
AAAATCACCA CGGCGTTTCT GACCCTGTCG GACAACCGCT ATGTGATCCT GATGTGCATC
AACTTCATGC TGTTGCTGCT GGGCACGGTG ATGGACATGG CGCCGCTGAT CCTGATCCTT
ACGCCGATCC TGTTGCCGGT AATCACCGGT ATCGGCGTGG ACCCGGTGCA CTTCGGCATG
ATCATGCTGG TGAACCTGGG AATCGGGCTG ATCACCCCAC CGGTGGGCGC CGTGCTGTTC
GTCGGTTCGG CCATCGGCAA GGTGAGCATC GAGTCGACGG TGAAGGCGCT GCTGCCGTTC
TACCTGGCGC TGTTCTTGGT GCTGATGGCG GTGACCTACA TTCCGGCCAT TTCGCTGTGG
CTGCCTAGCG TGGTGCTGTA A
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| Protein sequence | MDAFILLGSF IMLILLGMPV AYALGLSALI GAWWIDIPLQ AMMIQVASGV NKFSLLAIPF
FVLAGAIMAE GGMSRRLVAF AGVLVGFVRG GLSLVNIMAS TFFGAISGSS VADTASVGSV
LIPEMERKGY PREFSTAVTV SGSVQALLTP PSHNSVLYSL AAGGTVSIAS LFMAGVMPGL
LLSAVMMGLC LIFAKKRNYP KGEVIPMRQA LKIAGEALWG LMAMVIILGG ILSGVFTATE
SAAVAVVWSF FVTMFVYRDY KWRDLPKLMH RTVRTISIVM ILIGFAASFG YVMTLMQIPS
KITTAFLTLS DNRYVILMCI NFMLLLLGTV MDMAPLILIL TPILLPVITG IGVDPVHFGM
IMLVNLGIGL ITPPVGAVLF VGSAIGKVSI ESTVKALLPF YLALFLVLMA VTYIPAISLW
LPSVVL
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