| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_4053 |
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| Symbol | |
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| ID | 5871853 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | - |
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| Start bp | 4503742 |
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| End bp | 4507647 |
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| Gene Length | 3906 bp |
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| Protein Length | 1301 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 641549181 |
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| Product | ATP-dependent helicase HrpA |
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| Protein accession | YP_001670279 |
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| Protein GI | 167035048 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1643] HrpA-like helicases |
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| TIGRFAM ID | [TIGR01967] ATP-dependent helicase HrpA |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.954122 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 37 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTGACC ACGCCATCGA CAAACTGCTG CAAAACCTCG ACCACGCCAT GATTGCCGAC
CGTCATCGTC TGCGCCGGCA ACTGCACGAA CTGCGCAAGC GTCCCGATGA GGCAAAGCTG
GCGCAGTGGG TGGAAAAGGT CCAGGCCTCC TGCGCCCAGG TCACCGCGCG CCAGCAAAGC
GTGCCAACCG TGCGCTACGA CGACAACCTG CCGATCGCCG CCAAGCGTGA GGAAATCAAG
AAGGCCCTGG CCGAACACCA GGTGCTGGTG ATTGCCGGTG AAACCGGCTC GGGCAAGACC
ACCCAGTTGC CGAAGATCTG CCTGGAACTG GGCCGTGGCA GCCATGGGTT GATCGCCCAC
ACCCAGCCAC GCCGGATCGC CGCGCGCAGC GTGGCGGCGC GGGTCGCCGA AGAGCTGGGC
ACACCCTTGG GCGGGCTGGT TGGCTACCAG GTGCGCTTCG AAGACCAGAG CGATGCCAAC
ACCCTGGTCA AGCTGATGAC CGATGGCATC CTGCTGGCTG AAACCCAGCA TGACCGCTTC
CTCGAGCGCT ACGACACGAT CATCGTCGAC GAGGCCCACG AGCGCAGCCT GAACATCGAC
TTCCTGCTCG GCTACCTGAA GACGCTGCTG CATCGCCGGC CGGACCTGAA ACTGATCATC
ACTTCGGCCA CCATCGACCT GGAGCGCTTC TCCAAACACT TTGACGGCGC GCCGATCATC
GAGGTGTCCG GGCGCACCTT CCCGGTGGAA ACCTGGTACC GCCCGCTGAC CAGCGAGCAG
GACGAGGAAG GTAACCAGAT CGAGGACGAC CTCACCGTCG ACCAGGCCAT CCTCGCCACC
CTGGATGAAG TGGCGCAGCA TGAGCGCAGC GAGGGCAAAA GCCCCGGCGA TGTGCTGATC
TTCCTGCCGG GCGAGCGGGA AATCCGCGAT GCCGCGGAGA TCCTGCGCAA GGCGCAATTG
CGCCACACCG AGATTCTGCC GCTGTACGCG CGGCTGTCGC CTGCCGAACA GCAGCGCATT
TTCCAGCCGC ACACCGGGCG CCGCGTGGTG CTGGCCACCA ACGTCGCCGA AACCTCGCTG
ACTGTACCTG GCATCCGCTA TGTGATCGAC ACCGGTACTG CGCGTATCAG CCGCTACAGC
TACCGCGCCA AGGTTCAGCG CCTGCCCATC GAAGCGGTGT CGCAGGCCAG CGCCAACCAG
CGCAAGGGCC GTTGCGGCCG GGTCGAACCG GGCATATGCG TGCGGCTGTA CAGCGAAGAG
GATTTCAACA GCCGGCCAGC GTTCACCGAC CCAGAGATCC TGCGCACCAA CCTGGCGGCG
GTGATCCTGC AGATGCTGCA CCTGCGCCTG GGCGCTATCG ATGCCTTCCC GTTCATCGAG
CCGCCGGATG GCAAGGCCAT CAGCGACGGC TTCAACCTGC TGCAGGAGCT TTCGGCGGTC
AACCGCGAGA ACCAGCTGAC GCCTATCGGC CGCCAGCTGG CGCGTTTGCC AATCGACCCA
AGGTTGGGCC GCATGCTGCT CGAAGGCGCA CGCCAGGGCA GCTTGCAGGA AGTGCTGATC
GTCACCAGTG CGTTGTCGGT GCAGGACCCG CGCGAACGCC CGCCAGAGCG CCAGCAGGCC
GCCGACCAGG CGCACGCACA GTGGAAAGAC GTGGACTCCG ACTTCGCCGC GCTGGTCAAC
CTGTGGCGTG GTTTTGAGGA ACAGCGCCAG GCATTGACCG CCAACCCGCT GCGCAACTGG
TGCCGCAAGC ACTTCCTGAA CTACTTGCGC CTGCGTGAGT GGCGCGATGC CCATCGTCAG
CTGGCGCTGA TCTGCCGCGA CCTGCAGTTG ACGGTGAACA AGGAACCGAC CGACTACCAG
AAGCTGCACA AGGCGATCCT TAGCGGGCTG CTCAGCCAGA TCGGCCAGAA GACCGAAGAA
GGCGACTACC AAGGGGCCCG CCAGCGGCGC TTCTGGGTGC ATCCGTCGTC GGGCCTGGGG
CGCAAGCGCC CGCAGTGGGT AATGGCTGCC GAGCTGGTCG AAACCACCAA GCTTTATGCA
CGCATGGTGG CCAAGATCGA ACCGGACTGG ATCGAGCCGC TGGCCGGTCA CCTGATCAAG
AAGAACCACT TCGAGCCGCA CTGGGAGAAG AAGCGCGGGC AGGTGGTGGC CTATGAGCAG
ATCACCCTCT ACGGGCTGAT TCTGGTCGGC CGTCGGCCTG TGCATTACGG CCCGATCGAC
CCGGTCACCT CACGCGAGCT GTTCATCCGT GAAGGCCTGG TGGGCGGCGA GATTCAGTCA
CGGGCCAAGT GCCTGGCGGC CAACAAACGC CTGCTTGAAG AGCTCGACGA GCTGGAGGCC
AAGGCTCGTC GGCGCGACAT CCTGGCTGAC GAAGAAACGC TTTATGCCTT CTACGAAGCG
CGTCTGCCGG CGGAAATCCA TCAGACCGCG ACCTTCGACA GCTGGTACCG CATGGGCAGC
CAGAAGGACG CCAACCTGTT GATCATGCGC GAGGAAGACG TGCTGGCCCG TGAGGCTAGC
GAAGTGACCG CCGCGCAGTA CCCTGACAGC CTGCAAGTGG GCGAGCTGCG CCTGCCGCTG
AGTTACCACT TCGAGCCCGG CCACCCCCGC GATGGCGTTA CCGTGCGGGT GCCGGCGCCG
CTGCTGCCAA GCTTGCCGGG CGAGCGCCTG GAATGGTTGG TGCCAGGCCT GCTGGAAGCC
AAGTGCGTGG CGCTGGTGCG CAACCTGCCC AAGGCCCTGC GCAAGAACTT CGTACCGGTG
CCGGACTTCG TCAAGGCGTC GCTGGCGCGC ATGACCTTCG GCCAAGGGGC ACTGCCGCAG
GCCCTGGGCC AGGAGCTGTT GCGCATGACC GGTGCGCGCG TGCCGGACGA GGCCTGGGAC
GAATCGGTCA ACTTGGTCGA AGGCCATCTG CGCATGAACA TCGAGGTGGT CGATGGCCAG
GGCAAGTTCC TGGGCGAAGG CCGTGACCTG GCCGAACTGA CCGCGCGCTT TGCTGCCGCC
AGTCAGGCTG CCCTGGCCGT GCCGCGTGAT GCGAAAAGCG AACAGCCGGT GCAGGCCAAG
GCCTTCAGCG AAGTGAAGCA GACCGCTCAG CAGAAGATCG CCGGCCTGTC GATGACCGTG
TACCCGGCGC TGGTGGAAGA CAACGGCACT GTACGTGAAG GGCGCTTCTC GACCCAGGCC
GAAGCCGAGT TCCAACACCG CCGTGCATTG CAACGGTTGT TGTTGCAGCA ATTGGCCGAG
CCGGCCAAGT TTCTGCGTGG CAAGCTGCCG GGGCTGACTG AACTGGGCCT GCTGTACCGT
GAATTGGGCC GGGTCGAGGC GCTGGTCGAA GACATTCTGC TGGCCAGCCT GGACAGTTGC
ATCCTCGAAG GCGAGCAACC GTTGCCACGT GATGGTGCGG CCTTGGCCGG GCTGGCCGAG
CGTAAGCGCG GTAGCTGGGC CGAGCATGCC GAGCGCCTAG CACGCCAGAC GCTGGAGGTG
TTGAAACTGT GGCATGGCCT GCAGAAGCGC TTCAAGGGCA AGATCGACCT GAGCCAGGCG
GTGGCACTGA ACGACATCAA GCAGCAGTTG GGCAACCTGG TTTACCCGGG CTTCGTGCGC
GAAACGCCAG GGGCCTGGTT CAAGGAACTG CCGCGTTACC TCAAGGCGGT GGAACTGCGC
CTGGAGAAGC TGGGGTCGCA AGTGCAGAAG GACCGGGTGT GGAGCGGTGA GCTGGCCAAC
CTGTGGGCGC AGTACAAGGC CCGTGCCGAC AAGCATGCCC AGGAAGGCAA GCGCGATGAG
CAACTGGCCT TGTACCGCTG GTGGCTGGAG GAATATCGGG TGTCGCTGTT TGCCCAGCAG
CTGGGGACCA AGGTGCCGAT TTCCGACAAA AGATTGAGCA AACAATGGAG TCAGGTGGAA
GGCTAA
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| Protein sequence | MTDHAIDKLL QNLDHAMIAD RHRLRRQLHE LRKRPDEAKL AQWVEKVQAS CAQVTARQQS
VPTVRYDDNL PIAAKREEIK KALAEHQVLV IAGETGSGKT TQLPKICLEL GRGSHGLIAH
TQPRRIAARS VAARVAEELG TPLGGLVGYQ VRFEDQSDAN TLVKLMTDGI LLAETQHDRF
LERYDTIIVD EAHERSLNID FLLGYLKTLL HRRPDLKLII TSATIDLERF SKHFDGAPII
EVSGRTFPVE TWYRPLTSEQ DEEGNQIEDD LTVDQAILAT LDEVAQHERS EGKSPGDVLI
FLPGEREIRD AAEILRKAQL RHTEILPLYA RLSPAEQQRI FQPHTGRRVV LATNVAETSL
TVPGIRYVID TGTARISRYS YRAKVQRLPI EAVSQASANQ RKGRCGRVEP GICVRLYSEE
DFNSRPAFTD PEILRTNLAA VILQMLHLRL GAIDAFPFIE PPDGKAISDG FNLLQELSAV
NRENQLTPIG RQLARLPIDP RLGRMLLEGA RQGSLQEVLI VTSALSVQDP RERPPERQQA
ADQAHAQWKD VDSDFAALVN LWRGFEEQRQ ALTANPLRNW CRKHFLNYLR LREWRDAHRQ
LALICRDLQL TVNKEPTDYQ KLHKAILSGL LSQIGQKTEE GDYQGARQRR FWVHPSSGLG
RKRPQWVMAA ELVETTKLYA RMVAKIEPDW IEPLAGHLIK KNHFEPHWEK KRGQVVAYEQ
ITLYGLILVG RRPVHYGPID PVTSRELFIR EGLVGGEIQS RAKCLAANKR LLEELDELEA
KARRRDILAD EETLYAFYEA RLPAEIHQTA TFDSWYRMGS QKDANLLIMR EEDVLAREAS
EVTAAQYPDS LQVGELRLPL SYHFEPGHPR DGVTVRVPAP LLPSLPGERL EWLVPGLLEA
KCVALVRNLP KALRKNFVPV PDFVKASLAR MTFGQGALPQ ALGQELLRMT GARVPDEAWD
ESVNLVEGHL RMNIEVVDGQ GKFLGEGRDL AELTARFAAA SQAALAVPRD AKSEQPVQAK
AFSEVKQTAQ QKIAGLSMTV YPALVEDNGT VREGRFSTQA EAEFQHRRAL QRLLLQQLAE
PAKFLRGKLP GLTELGLLYR ELGRVEALVE DILLASLDSC ILEGEQPLPR DGAALAGLAE
RKRGSWAEHA ERLARQTLEV LKLWHGLQKR FKGKIDLSQA VALNDIKQQL GNLVYPGFVR
ETPGAWFKEL PRYLKAVELR LEKLGSQVQK DRVWSGELAN LWAQYKARAD KHAQEGKRDE
QLALYRWWLE EYRVSLFAQQ LGTKVPISDK RLSKQWSQVE G
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