| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_4046 |
|---|
| Symbol | |
|---|
| ID | 5871846 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | + |
|---|
| Start bp | 4495403 |
|---|
| End bp | 4496326 |
|---|
| Gene Length | 924 bp |
|---|
| Protein Length | 307 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 641549174 |
|---|
| Product | LysR family transcriptional regulator |
|---|
| Protein accession | YP_001670272 |
|---|
| Protein GI | 167035041 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 40 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 37 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAGCGC CGCGCGTAAC CCTAGACCAG TGGCGAACCC TGCAAGCAGT GGTCGATCAC
GGCGGGTTTG CCCAGGCCGC CGAGGCGTTG CACCGCTCGC AGTCCTCGGT CAGCTACACC
GTGGCCCGCA TGCAAGAGCA ACTGGGTGTG CCGCTGTTGC GCATCGATGG CCGCAAGGCG
GTGCTGACCG AGGCCGGCAA TGTGCTGCTG CGCCGCTCGC GCCACCTGGT CAAGCAGGCC
AGCCAGCTCG AAGACCTTGC CCACCACATG GAACAGGGCT GGGAAGCCGA AGTGCGCCTG
GTGGTCGATG CCGCCTACCC CAGTGCGCGC CTGGTGCGCG CGCTGGCCGC ATTCATGCCA
CAGAGCCGCG GCTGCCGGGT GCGCCTGCGT GAAGAAGTGC TGTCTGGCGT AGAAGAAGTG
ATGCACGAAG GCATCGCCGA CCTGGCCATC AGCAGTTACA GCATCGGCGG CTACCTGGGC
GCCGAACTGA GCGCGGTCGA GTTTGTCGCC GTCGCTCACC CCGAACACAG CCTGCACCGC
CTGGGCCGCG AACTGACCTT CCAGGACCTG GAAAGCCAAT TGCAGGTGGT GATCCGCGAC
TCCGGCCGCG CCCAGCCACG CGACGTCGGC TGGCTGGGTG CCGAACAACG CTGGACCGTC
GGCAGCCTGG GCACCGCTGC CACCTTCGTC AGCAGCGGCC TGGGCTTTGC CTGGCTGCCC
CGGCACATGA TCGAGCGTGA ACTGCGCGAA GGCGTGCTCA AGCCTTTACC GCTAGATCAG
GGTGGCAGCC GTCACCCGCT GTTCTACCTT TATTCGAGCA AAGAGAAGAC CCTGGGCCCG
GCTACGCAGA TTCTCATCGA CCTGCTGCGC AATTTCGACA CCGCGCCACT GGACGTGCCC
TTCGCAGCCC CCCCACAAGC TTGA
|
|---|
| Protein sequence | MKAPRVTLDQ WRTLQAVVDH GGFAQAAEAL HRSQSSVSYT VARMQEQLGV PLLRIDGRKA
VLTEAGNVLL RRSRHLVKQA SQLEDLAHHM EQGWEAEVRL VVDAAYPSAR LVRALAAFMP
QSRGCRVRLR EEVLSGVEEV MHEGIADLAI SSYSIGGYLG AELSAVEFVA VAHPEHSLHR
LGRELTFQDL ESQLQVVIRD SGRAQPRDVG WLGAEQRWTV GSLGTAATFV SSGLGFAWLP
RHMIERELRE GVLKPLPLDQ GGSRHPLFYL YSSKEKTLGP ATQILIDLLR NFDTAPLDVP
FAAPPQA
|
|---|
| |