| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_4002 |
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| Symbol | |
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| ID | 5871802 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | - |
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| Start bp | 4455020 |
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| End bp | 4456087 |
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| Gene Length | 1068 bp |
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| Protein Length | 355 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 641549130 |
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| Product | RNA-binding S4 domain-containing protein |
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| Protein accession | YP_001670228 |
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| Protein GI | 167034997 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
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| TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 31 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.0000006993 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGAGTGAGC AAGACCTGCA AGATACCGAA ATCACCCCTC CATCCGGCGA AAAGCTGCAG
AAAGTGCTGG CGCGCATTGG CGTGGGCTCG CGCCGTGACG TCGAGGCCTG GATCAGCCAG
GGCCGCATCA AGGTCAACGG CGTCGAGGCC ACCCTCGGCC AGCGCGTCGA CCTGCACGAT
GCCATTGCCG TTGACGGCAA GCTGATCAAG CGCGAGGAAG CCGCCGAGGC CACCCGTCGG
GTGATCATGT ACAACAAGCC CGATGGCGAA ATCTGCACCC GTGACGACCC GGAAGGCCGC
CCGACCGTGT TCGACCGCCT GCCACGGCCA AAAGAAGGCC GCTGGATCAA CATCGGCCGC
CTCGACATCA ACACCACCGG GTTGCTGCTG TTCACCACCG ACGGTGAGCT GGCCAACCGC
CTGATGCACC CGTCCTACGA GATGGACCGT GAGTACGCGG TGCGTGTGCG TGGTGAAGTC
GACGACGAGA TGATCGAACG CCTGAAAGCC GGGGTGATGC TGGAAGACGG CCCGGCGAAG
TTCACCGACA TCCAGAAGGC ACCGGGTGGT GAAGGCTTCA ACCACTGGTA CCACTGCGTG
GTGATGGAAG GCCGTAACCG TGAAGTGCGT CGCCTGTGGG AATCCCAGGG CATGGTGGTC
AGCCGCCTGA AGCGTGTGCG TTTCGGTCCG GTGTTCCTCA ACTCCGACCT GCCGATGGGC
CGCTGGCGTG AAATGACCCA GGGTGAAATC GACATCCTCG CCGCCGAAGT GGGCCTGCAG
CCAGTCGCGC TGCCTGCCAT GAAGCTCAAG GCCAAGGACA AGATGGAGCG CCTGCAGCGC
AAGTCGACCC GCCCGCTGGG CCGTGGTGAG CGCGTGCGCA ACCTGCGCCC GGCTCACGAA
GGTGCAGCCA CCGGCGAGCG CCCGGCGCGC CAACCGCGTG AAGAGGCCCC GCGTAAGAAC
ACCCGTGGCA GCACGGTGGC CGAGCGTCCG AGCGAAATGC GCAAGCGTCC GGCCAAGCCG
GAGGGTGACA AGCCGGCAGG CCGTGGCCGC GGCAAGCCGC GTGGCTGA
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| Protein sequence | MSEQDLQDTE ITPPSGEKLQ KVLARIGVGS RRDVEAWISQ GRIKVNGVEA TLGQRVDLHD
AIAVDGKLIK REEAAEATRR VIMYNKPDGE ICTRDDPEGR PTVFDRLPRP KEGRWINIGR
LDINTTGLLL FTTDGELANR LMHPSYEMDR EYAVRVRGEV DDEMIERLKA GVMLEDGPAK
FTDIQKAPGG EGFNHWYHCV VMEGRNREVR RLWESQGMVV SRLKRVRFGP VFLNSDLPMG
RWREMTQGEI DILAAEVGLQ PVALPAMKLK AKDKMERLQR KSTRPLGRGE RVRNLRPAHE
GAATGERPAR QPREEAPRKN TRGSTVAERP SEMRKRPAKP EGDKPAGRGR GKPRG
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