| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_3990 |
|---|
| Symbol | |
|---|
| ID | 5871790 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | - |
|---|
| Start bp | 4438348 |
|---|
| End bp | 4439037 |
|---|
| Gene Length | 690 bp |
|---|
| Protein Length | 229 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 641549118 |
|---|
| Product | polar amino acid ABC transporter, inner membrane subunit |
|---|
| Protein accession | YP_001670216 |
|---|
| Protein GI | 167034985 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG4215] ABC-type arginine transport system, permease component |
|---|
| TIGRFAM ID | [TIGR01726] amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 45 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 32 |
|---|
| Fosmid unclonability p-value | 0.456811 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTGAAAG GCTACGGGGC AGTCATCCTC GACGGGGCGT GGCTGACGCT GCAGCTCGCC
CTGTCGTCGA TGGCCCTGGC CATCGTGCTC GGCCTGATCG GCGTAGCGCT GCGCTTGTCG
CCGGTGCGCT GGCTGGCCTG GCTGGGCGAT CTGTATTCCA CGGTGATCCG TGGCATTCCG
GACCTGGTCC TGATCCTGCT GATCTTCTAC GGCGGGCAAG ACATCATCAA CCGAGTGGCG
CCGCTGCTCG GCTACGAAGA CTACATCGAC CTGAACCCGC TGATTGCAGG TATCGGTACG
CTGGGCTTCA TTTTTGGCGC CTATCTGTCG GAAACATTCC GCGGCGCGTT CCTGGGTATC
CCCAAAGGCC AGGCCGAAGC GGGCGTGGCC TATGGCATGA GCAATCGTCA GGTATTTTTC
CGCATCCAGG TGCCGCAAAT GATTCGCCTG GCGATCCCTG GCTTCACCAA CAACTGGCTG
GTACTGACCA AGGCTACCGC GCTGATCTCG GTGGTCGGTT TGCAGGACAT GATGTTCAAG
GCCAAGCAGG CGGCGGATGC CACCCGCGAG CCGTTCACCT TCTTCCTGGC GGTGGCGGCC
CTGTACCTGG TGCTGACCAG TGTCTCGCTG CTGGCCCTGA AGTATCTGGA GCGCCGCTAC
TCGGTAGGCG TCAAGGTGGC TGAACTATGA
|
|---|
| Protein sequence | MLKGYGAVIL DGAWLTLQLA LSSMALAIVL GLIGVALRLS PVRWLAWLGD LYSTVIRGIP
DLVLILLIFY GGQDIINRVA PLLGYEDYID LNPLIAGIGT LGFIFGAYLS ETFRGAFLGI
PKGQAEAGVA YGMSNRQVFF RIQVPQMIRL AIPGFTNNWL VLTKATALIS VVGLQDMMFK
AKQAADATRE PFTFFLAVAA LYLVLTSVSL LALKYLERRY SVGVKVAEL
|
|---|
| |