| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_3934 |
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| Symbol | |
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| ID | 5871728 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | - |
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| Start bp | 4378461 |
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| End bp | 4379936 |
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| Gene Length | 1476 bp |
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| Protein Length | 491 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 641549056 |
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| Product | sigma-54 dependent trancsriptional regulator |
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| Protein accession | YP_001670160 |
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| Protein GI | 167034929 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 0.532257 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 55 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTGGCGTG AAACCAAGAT TCTGCTGATC GATGACGACA GCGCGCGCCG CCGCGACCTT
GCGGTGGTGC TGAACTTCCT CGGCGAAGAA AACCTCGCGT GCGCCAGCCA TGACTGGCAG
CAGGCGGTGG AGCCTTTGTC CTCGAGCCGC GAAGTGCTGT GCGTGCTCAT CGGTACCGTA
AATGCTCCGG GCAACCTTCT TGGGCTGCTT AAGACAGTGG CTGCCTGGGA TGAGTTCCTT
CCGGTTCTGC TTTTAGGTGA AATTTCTTCT GCAGAGTTGC CAGAGGACCT TCGCCGCCGG
GTACTTTCCA ACCTGGAAAT GCCGCCAAGC TACAGCCAAC TGCTGGATTC GCTGCACCGT
GCCCAGGTTT ACCGCGAAAT GTACGACCAG GCGCGCGAGC GCGGTCGCCA ACGCGAGCCC
AACTTGTTCC GCAGCCTGGT AGGCACCAGC CGTGCCATCC AGCATGTGCG GCAGATGATG
CAGCAAGTGG CCGATACCGA TGCCAGCGTG CTGATCCTGG GTGAGTCGGG CACTGGCAAG
GAAGTGGTGG CGCGCAACCT GCACTACCAT TCCAAGCGCC GTGAAGCGCC ATTCGTACCG
GTCAACTGCG GTGCGATCCC GGCTGAGCTG CTGGAAAGCG AACTGTTCGG TCATGAGAAG
GGTGCCTTTA CCGGGGCAAT CACCAGCCGT GCCGGGCGTT TCGAGCTGGC CAATGGCGGC
ACCCTGTTCC TCGACGAAAT CGGTGACATG CCGTTGCCGA TGCAGGTCAA GCTGTTGCGC
GTGCTGCAAG AGCGCACCTT CGAGCGCGTG GGTAGCAACA AGACCCAGAG CATCGATGTG
CGCATCATCG CCGCGACGCA CAAAAACCTC GAAAGCATGA TCGAGGACGG CACCTTCCGT
GAAGACTTGT ACTACCGCCT GAACGTGTTC CCCATCGAGA TGGCGCCGTT GCGTGAGCGG
GTGGAAGACA TCCCGTTGCT GATGAACGAG CTGATTTCGC GCATGGAGCA CGAGAAGCGC
GGGTCCATTC GCTTCAACTC TGCGTCGATC ATGTCGCTGT GTCGCCACGG CTGGCCGGGT
AACGTGCGTG AGTTGGCCAA CCTGGTCGAG CGCATGGCGA TCATGCACCC GTACGGGGTG
ATTGGCGTGT CTGAACTGCC GAAGAAATTC CGCTATGTCG ACGATGAAGA CGAGCAGATG
GTCGACAGCC TGCGCAGTGA TCTGGAGGAG CGCGTGGCCA TCAATGGCCA CACGCCGAAC
TTCAGCAACC ATGCCATGCT GCCGCCTGAA GGCCTGGACC TCAAGGACTA CCTCGGCAGC
CTGGAGCAGG GGCTGATCCA GCAGGCGCTG GACGATGCCA ACGGTATCGT TGCGCGCGCA
GCGGAACGTT TGCGTATTCG TCGTACCACG CTGGTGGAGA AGATGCGCAA GTATGGTATG
AGCCGCCAGG GTGGTGAGGG CCAGGCAGAA GATTGA
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| Protein sequence | MWRETKILLI DDDSARRRDL AVVLNFLGEE NLACASHDWQ QAVEPLSSSR EVLCVLIGTV
NAPGNLLGLL KTVAAWDEFL PVLLLGEISS AELPEDLRRR VLSNLEMPPS YSQLLDSLHR
AQVYREMYDQ ARERGRQREP NLFRSLVGTS RAIQHVRQMM QQVADTDASV LILGESGTGK
EVVARNLHYH SKRREAPFVP VNCGAIPAEL LESELFGHEK GAFTGAITSR AGRFELANGG
TLFLDEIGDM PLPMQVKLLR VLQERTFERV GSNKTQSIDV RIIAATHKNL ESMIEDGTFR
EDLYYRLNVF PIEMAPLRER VEDIPLLMNE LISRMEHEKR GSIRFNSASI MSLCRHGWPG
NVRELANLVE RMAIMHPYGV IGVSELPKKF RYVDDEDEQM VDSLRSDLEE RVAINGHTPN
FSNHAMLPPE GLDLKDYLGS LEQGLIQQAL DDANGIVARA AERLRIRRTT LVEKMRKYGM
SRQGGEGQAE D
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