| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_3567 |
|---|
| Symbol | |
|---|
| ID | 5871358 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | - |
|---|
| Start bp | 3967875 |
|---|
| End bp | 3968636 |
|---|
| Gene Length | 762 bp |
|---|
| Protein Length | 253 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 641548688 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001669794 |
|---|
| Protein GI | 167034563 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0730] Predicted permeases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.000000000059782 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 32 |
|---|
| Fosmid unclonability p-value | 0.277747 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATGGATA TTGCTGTGCT TTGCGTGTTC GCCTTCGCCG CTGGGCTGAT CGATGCCGCC
GTGGGTGGCG GCGGGCTGAT CCAGATCCCT GCGTTGTTCA ACGTGCTGCC CACCGCGCAA
CCGGCGGCAT TGCTCGGCAG CAACAAGCTG GCGTCGGTAT GTGGCACGGC CTTCGCGGCG
CGTTCGTTCA TCCGCAAGGT GACGCTGGAC TGGGGGTTGA TCGTGCCGGC GGCACTCAGC
GCCTTTGTCA TGTCGTTCGC CGGAGCTGCC ACAGTGTCGC TGGTGCCCTC CAGCGTGATG
CGCCCGGCTG TGCTGGTGCT GATCGTGCTG ATGGCCATCT ACACCTTCTG CAAGAAGGAC
TTCGGCACCC TGCACAAGCC TGCGCGGATC GGCCGCAAGG AGCAGTGCCT GGCGGTGCTG
ATCGGCGGTG CGATCGGCTT TTACGATGGC CTGTTCGGCC CGGGTACCGG TAGCTTCCTG
ATCTTCCTGT TCATCCGCTT CTTTGCCCTG GACTTCCTGC ACGCTTCGGC GTCGGCCAAG
GTGGTGAACA TTGCCACCAA CCTGGCGGCG CTGGTGTTCT TCGTACCGAC GGGCAACGTG
CTGTATGCCA TCGCCTTGCC GATGGCGGTG TGCAACATCC TTGGTGCGCT GACCGGTACC
TGGCTGGCCG TACGCAAGGG TGCCGGCTTT GTCCGCGGGC TGTTCCTGCT GCTGTTGTGT
GTGCTGATCG CCAAGCTGTC GTGGGACTTG CTGGCCGGCT AG
|
|---|
| Protein sequence | MMDIAVLCVF AFAAGLIDAA VGGGGLIQIP ALFNVLPTAQ PAALLGSNKL ASVCGTAFAA
RSFIRKVTLD WGLIVPAALS AFVMSFAGAA TVSLVPSSVM RPAVLVLIVL MAIYTFCKKD
FGTLHKPARI GRKEQCLAVL IGGAIGFYDG LFGPGTGSFL IFLFIRFFAL DFLHASASAK
VVNIATNLAA LVFFVPTGNV LYAIALPMAV CNILGALTGT WLAVRKGAGF VRGLFLLLLC
VLIAKLSWDL LAG
|
|---|
| |