| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_3354 |
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| Symbol | |
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| ID | 5871139 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | + |
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| Start bp | 3785111 |
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| End bp | 3786847 |
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| Gene Length | 1737 bp |
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| Protein Length | 578 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 641548470 |
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| Product | type I secretion system ATPase |
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| Protein accession | YP_001669582 |
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| Protein GI | 167034351 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4618] ABC-type protease/lipase transport system, ATPase and permease components |
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| TIGRFAM ID | [TIGR01842] type I secretion system ABC transporter, PrtD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 0.74579 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 40 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCTAAGC CACCGCGCAC CCGCTCCGAG CTGGCCGACG TGTTGTTTCG CTTGCGTCGC
AGCTTTTACG CCCTGGCCGC CTTCAGCGGC GTGATCAACG TCATGATGTT GACGCCAGCC
ATTTACATGC TGCAGGTGTA CGACCGCGCC CTGGTGAGCC GCAATGTCAC GACCTTGGCC
ATGCTTACCC TGCTGGTGGT AGGGCTGTTC CTGCTGATGT CGGCGCTGGA GATGGTCCGC
ACCCGGGTGC TGATCCGGGT CGGTAACTGC CTGGACATGA ACCTCAACCG GCGCCTTTTC
AGCGCCGCCT TCGAGCGCAA CCTGAACCGC GCCGGCGGGA ACCCGGCCCA GGCACTGCAG
GACTTGGCGC AGGTGCGCCA ATTTCTTACT GGCAACGGCC TGTTCGCCTT CTTCGACGCG
CCCTGGACGC CGATCTACCT GCTGGTCTGT TACCTGATCC ACCCGTGGCT TGGGCTGGTG
ACGACAATCG GCTCGCTGAT TCTGGTCGGC CTGGCCTACC TCACGGAAAA AGCCACGCAA
AAGCCCTTGG CCGAAGCCAA CCAGGCGGCC ATGTCGTCGG CCAGCTACGC CAACAACAAC
TTGCGCAACG CTGAAGTGAT CGAGGCCATG GGCATGCTGC CGGCAATCGG CAAGCGCTGG
TACCAGGGCC ACTTGCGCAT CCTGCAGATG CAGACCCTGG CCTCCGACCG CGCGGCACTG
ATCAGCAGCA CCGGGCGCTT CGTGCGTATC ACCTTGCAGT CACTGATTCT TGGCACCGGC
GCACTGCTGG CGATCGAGGG CAAGATCACC CCCGGCATGA TGATCGCCTG CTCGATCCTG
ACCGGCCGCG CATTGGGCCC GGTGGAGCAG GTGATCGCGT CCTGGAAGCA ACTGCTGGGC
TGCCGCCTGG CCTGGGGCCG GCTCAACGAC CTGCTGCAGG ACTACCCGCA ACGGCCACCG
AGCATGTCCC TGCAGCGCCC GATGGGCATG CTGGCCGTGG AAAATGTGAT CGCTGGCGCC
CCCGGCAGCA GCACCAGCAT CGTGCGCGGG GTGAGCTTCA GCCTGGCCCA GGGCGACAGC
CTGGGCATCA TTGGCCCCTC GGCCTCGGGC AAATCCACCC TTGCCCGCCT GCTGGTGGGG
GTGTGGCCGA CCCAGGCCGG CAAGGTGCGC CTGGACGGTG CCGACATCTT CAACTGGAAC
AAGGCCGAAC TGGGCCCGTG GCTGGGCTAC CTGCCACAGG ACGTGGAGCT GTTCGAAGGC
ACCATCGCCG AAAACATCGC ACGCTTTGCC GAGGTGGACA GCGACGCGGT GATCCGTGCT
GCCCGCAGCA GTGGCGTGCA TGACATGATC CTGCGTTTCC CGCAGGGCTA CGACACCCGC
CTGGCCGCCG ACGGCAGCCC GCTGTCCGGA GGCCAGAAGC AACGCATCGC CCTGGCCCGC
GCATTGTACG GCGAGCCTAA CCTGGTAGTG CTGGACGAGC CAAACGCCAA CCTTGATGAC
GTCGGCGAAA AGGCCCTGGT CGATGCCCTG GCCGAACTCA AGACGCGCGG GGCCACGGTG
GTCCTCATCT CCCACCGGCC TAACGTGCTG TGCGCGGTGG ACCAGATACT GATGCTGCGC
GACGGTGGAG TGCACATGCT CGGCAGCCGC GACGAAGTAT TTGCAGCCTT GCGCAAGGCT
GCGGTGATTC CGGCGACCGC GGCCGCCCCG CTGGCTTCGG TAAAAGTACG GGAGTAA
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| Protein sequence | MPKPPRTRSE LADVLFRLRR SFYALAAFSG VINVMMLTPA IYMLQVYDRA LVSRNVTTLA
MLTLLVVGLF LLMSALEMVR TRVLIRVGNC LDMNLNRRLF SAAFERNLNR AGGNPAQALQ
DLAQVRQFLT GNGLFAFFDA PWTPIYLLVC YLIHPWLGLV TTIGSLILVG LAYLTEKATQ
KPLAEANQAA MSSASYANNN LRNAEVIEAM GMLPAIGKRW YQGHLRILQM QTLASDRAAL
ISSTGRFVRI TLQSLILGTG ALLAIEGKIT PGMMIACSIL TGRALGPVEQ VIASWKQLLG
CRLAWGRLND LLQDYPQRPP SMSLQRPMGM LAVENVIAGA PGSSTSIVRG VSFSLAQGDS
LGIIGPSASG KSTLARLLVG VWPTQAGKVR LDGADIFNWN KAELGPWLGY LPQDVELFEG
TIAENIARFA EVDSDAVIRA ARSSGVHDMI LRFPQGYDTR LAADGSPLSG GQKQRIALAR
ALYGEPNLVV LDEPNANLDD VGEKALVDAL AELKTRGATV VLISHRPNVL CAVDQILMLR
DGGVHMLGSR DEVFAALRKA AVIPATAAAP LASVKVRE
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