Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputGB1_3131 |
Symbol | |
ID | 5870916 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida GB-1 |
Kingdom | Bacteria |
Replicon accession | NC_010322 |
Strand | - |
Start bp | 3507356 |
End bp | 3507994 |
Gene Length | 639 bp |
Protein Length | 212 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 641548247 |
Product | two component LuxR family transcriptional regulator |
Protein accession | YP_001669359 |
Protein GI | 167034128 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 36 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 32 |
Fosmid unclonability p-value | 0.33361 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAATATCG TGTTGGTCGA TGACCATGCC GTGGTCCGCC AGGGCTACGC CAGCCTGCTG CGGGCGGTGC TGCCGTTGAT GCAGGTGCGT GAGGCTGCCA GTGGTGAAGA GGCGCTGGCC CGGGTGCAGG AGCAAGTCCC CAACCTGGTG ATCATGGACT TTGGCCTGCC CGGTATCAGT GGCCTGGAAA CCACCCGTCG CCTGCGCCAG CGCCTGCCGC AACTGCGGGT ACTGTTTTTC AGCATGCACG ACGAGCTGCC GCTGGTGCGC CAGGCGCTGG ACGCGGGGGC CTCGGGCTAC CTGACGAAGA ACTCGGCGCC CGAGGTGTTG ATCGAGGCGG TGCAGCGGGT GATGGCCGGG CATGCCTACA TCGAGCAGCC TCTGGCCACC CAGTTGGCGT GCACGTCACA GCAGAGCGCC AGTGATCCAC GGTTGCAGCG CATGACCCAG CGCGAGCTGG AGATTTTCAC GATGCTGGCC AAGGGGACGC CGATGCGGGT GATTGCCGAG CAGTTGTGTA TCAGTGCCAA GACCGTGTCC AACCACCTGA CCTTGCTCAA GAGCAAGTTG CAGGTCAGCT CGCATGCCGA GCTGGTGCAC CTGGGGATCG ACCTTGGGGT GGTACGGGTG GCGGGGTGA
|
Protein sequence | MNIVLVDDHA VVRQGYASLL RAVLPLMQVR EAASGEEALA RVQEQVPNLV IMDFGLPGIS GLETTRRLRQ RLPQLRVLFF SMHDELPLVR QALDAGASGY LTKNSAPEVL IEAVQRVMAG HAYIEQPLAT QLACTSQQSA SDPRLQRMTQ RELEIFTMLA KGTPMRVIAE QLCISAKTVS NHLTLLKSKL QVSSHAELVH LGIDLGVVRV AG
|
| |