| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_2946 |
|---|
| Symbol | |
|---|
| ID | 5870731 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | - |
|---|
| Start bp | 3296744 |
|---|
| End bp | 3297961 |
|---|
| Gene Length | 1218 bp |
|---|
| Protein Length | 405 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 641548062 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001669174 |
|---|
| Protein GI | 167033943 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG3970] Fumarylacetoacetate (FAA) hydrolase family protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 0.496966 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 42 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACTGAAC GATCGAACGC CAATCAACCG CTGACGCTAA AACATGATGC CAGCGTGTTC
GATAACGGCA GCTGGGTAGG GCGGGTCTGG TTGCCGGACC AAGGGCCGGC GGTGGTGCTA
GTGAAAGGCG GTGCCGTCTA CGATATCAGC ACCCACGTGG CGACTGTATC GGCCCTGCTG
GAAGTGGCCG ACCCGGTGGC CTACCTGCGT GCCTTGCCGT TGGCCGAACC CTTGATTGCG
TTGCCGGCAT TGCTGGGCAA CAGCGACCCC GCTCAGCGCG ACCCACGCCA ACCCTGGCTG
CTGGCGCCGA TCGACCTGCA AGCGGTAAAG GCCGCAGGCG TGACCTTCGC CACCAGCCTG
CTGGAGCGTG TGGTGGAAGA ACAGGCCAAG GGCGACCCGG CCAAGGCTGA CGCTATCCGT
GACACCCTGG CCAGCCGCAT CGGGGCCGAT TTGTCGCAGA TCGTACCTGG CTCGGCCCAG
GCCGAAGCGC TACGCAAGGT GCTGGTAGAG CAGGGCCTGT GGTCGCAGTA CCTGGAGGTG
GGCATCGGCC CGGATGCCGA AGTGTTCACC AAGGCCCAGC CGCTGTCGGC CGTTGGTCAC
GGCGCCGACA TTGGCATCCA CCCCAAGTCC AGCTGGAACA ACCCAGAGCC CGAAGTGGTA
CTGGCGGTGT CGAGCGATGG CAGCATCAAG GGCGCCATGC TCGGCAACGA CGTCAACCTG
CGTGACTTCG AAGGGCGCAG CGCCTTGCTG CTGTCCAAGG CCAAGGACAA CAACGCGTCC
ACTGCACTGG GCCCGCTGCT GCGGCTGTTT GACGAAAGCT TTGGTCTGGA CGATGTGCGC
GCCGCCGAGG TGGACCTGCG GGTCGAAGGC ATGGACGGTT TCATCCTGTC CGGGCGTAGC
TCAATGCGGC AGATCAGCCG TGACCCGCAA GACCTGGTGC AGCAAACCCT CAACGAGAAT
CACCAATACC CCGACGGCCT GGTGCTGTTC CTCGGTACCC TGTTCGCTCC CAAGCAGGAC
CGCGATCAGC CGGGTAACGG CTTTACCCAC AAACCGGGTG ACGTGGTGAG CATCAGCAAC
CCGCAACTGG GTACTCTGTG CAACCGCGTG ACCACCAGCG ATCTGGCACC GCAGTGGGCC
TTTGGCCTGC GCGCGCTGAT CGACAACCTT GGCCAACGTG GCCTGTTGGA GGTTGCAGCC
ACCGCGCGCC AGTTTTGA
|
|---|
| Protein sequence | MTERSNANQP LTLKHDASVF DNGSWVGRVW LPDQGPAVVL VKGGAVYDIS THVATVSALL
EVADPVAYLR ALPLAEPLIA LPALLGNSDP AQRDPRQPWL LAPIDLQAVK AAGVTFATSL
LERVVEEQAK GDPAKADAIR DTLASRIGAD LSQIVPGSAQ AEALRKVLVE QGLWSQYLEV
GIGPDAEVFT KAQPLSAVGH GADIGIHPKS SWNNPEPEVV LAVSSDGSIK GAMLGNDVNL
RDFEGRSALL LSKAKDNNAS TALGPLLRLF DESFGLDDVR AAEVDLRVEG MDGFILSGRS
SMRQISRDPQ DLVQQTLNEN HQYPDGLVLF LGTLFAPKQD RDQPGNGFTH KPGDVVSISN
PQLGTLCNRV TTSDLAPQWA FGLRALIDNL GQRGLLEVAA TARQF
|
|---|
| |