| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_2858 |
|---|
| Symbol | |
|---|
| ID | 5870644 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | - |
|---|
| Start bp | 3204068 |
|---|
| End bp | 3206146 |
|---|
| Gene Length | 2079 bp |
|---|
| Protein Length | 692 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 641547976 |
|---|
| Product | type VI secretion system Vgr family protein |
|---|
| Protein accession | YP_001669088 |
|---|
| Protein GI | 167033857 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3501] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | [TIGR01646] Rhs element Vgr protein
[TIGR03361] type VI secretion system Vgr family protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.374803 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 0.207801 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCTAGCC AATCCGATTT GCGCTTCACC TTCCAGCCGC TGGTGGGCCG TAGCGAGTTC
GAAGTGGTGT CGTTCGAGCT GGATGAAGCC ATCAGCACAC CATTCCAGTT GCAGCTGGAA
CTGATCAGTT TCGAAGACGC TGTCGACTTT GGCCAACTGC TCGACAAACC GGTGTTGTTC
ACCCTTTGGC GCGGTGAGCG CCCGCTGCGC TATGTGCACG GCCTGGTCAG CACGTTTAGC
CAAGGTGAAA CGGGCTTCCA TCGCACCCGC TACCACGCCT TGGTCGAGCC CGTGCTGGCC
CGTGCGGGGT TGCGCTCGAA CTGGCGCATC TTCCAGCAGA AAACCGTATC GCAAATCCTC
GAAATCATGC TCAAGCGCCA GGGCGTGAAT GCGTACCAGC TCAAGTGCAT CGATCAGCAC
CAGGTGCGCG AATTCTGCGT GCAGGCCGGT GAAACCGACC TCGATTTCAT TGCTCGCCTG
GCCGCCGAAG AGGGCCTCGT CTACCGCTTC GAGCACACGC CGAAAGGCCA CACGCTGATC
ATCACCGACC GGCTGCTGGC GCTGGGGCAG ATCAGTCAGG GCGTCATCAA GGCCGACGAC
GAGGATGAAG GTTTCTTCGA ACAGGCTGAC ATCGACCCCA ACCAGGTGCT GTACCACGCC
AACAGTGCTG GCGATCAGGC AATACCCTGC CTGCGCCACC TGCGCTACAG CGAGCAGGTA
CGTACCGCGC GCCAGGTTCA GCGCGACCAC ACCTTCACCC ACCCGGCTTA TCGCCTGGAG
CTACGCGCCG AGGGCGGCGA CCTGGCGCAC CAGTCCACCG CCTACGAACG CTTCGACTAC
CCCGGCCGCT ACAAGCGCGA GGCGGTCGGC GTGCCTTTCA CCGCCACCCG CATCACGGCC
CTGCGCCATG ATGCCCGCAT GGCCGAGGTG GAAGGCGACG ATGTGCGCCT GCAACCGGGG
CTGAGTTTCA CCCTGATCGA GCACCCGCGC GAAGACCTGA ACCTGCATTG GCGGGTCACC
CGCGTGCACC ACGAGGGCAC CCAGTTCACC AGCCTGCAGG AAGAGGCAGC AGGTGCGCAG
CTAGGCACCC GCTACAAGCA GGACGCCGTG CTGGTCCCCG GCAGAACCGA ATGGCGCCCG
GCCCCCTTGC CCAAACCGCG CATCGACGGC CCGCACATGG CCACGGTGGT GGGGCCGAAG
GGCGAGGAAA TCTACTGCGA CCAATGGGGC CGGGTGAAGG TCAGCTTTCC TTGGGACCGG
GAGAGCGAAA ACAACGAGTT CAGCTCCTGC TGGGTACGCG TGTCGCAGGG CTGGGCCGGT
GGTAGCTGGG GTTCGATGGC CATCCCGCGC ATCGGCCAGG ACGTGATCAT CCAGTACGTC
AACGGCGACC CGGACCAGCC GATGATCACC GGGCGCACCT ACTGCGGCAA CCAGCTGCCG
CCCTATGACC TGCCCGAACA CAAGACACGC ATGACCATCA AGAGCCAGAC CCACAAGGGT
GATGGCTACA ACGAGCTGCG TTTCGAAGAC GAGTTGGGCA AAGAGGAAGT GTTCATTCAT
GCCCAGCGGG ACCAGAACAA TGTGGTCGGC AATGATGAGA CCACGCGTGT CGGGCGCAAT
CGGATCGAGC AGGTCGGTCA AGATCAGCAG TTGAACATTG GTAACGACTA CCGCCAGGAC
ACAGCGCGTG ACCACACCCA GGTCATCGGT CAAAACTGCC TTGTGGACAT CAAACACAAC
CTGATCGAGA CGGTGGGCAA CGATCATCGC GAATCTACCG GTGCCAATTA CCACGCTTTC
ATAGGCAAGG ACAGCGAGCT TGTCGTCAAA GGTGCCCAGA AGGTCAAGGT CGGGCAGGGC
ATGGAACAAC GCACCACGGT CTACCAGCTG TGGGCCAGTG AGCGCATCGA GCTTAGAACG
CCAGGTGGCA GCCTGGTGTT GGATGAGCAG GGCATCACCC TCAATGGGCT GACACTCGAC
CTGCTGGGAC AAACCAAGGC GGTTGCGAAA GGTGATGGAA ATACCCAGTC ACTAGCGCTT
AGGCCGGAAG CCGGCACCAC CTGTGAGGCC AAGTCGTGA
|
|---|
| Protein sequence | MSSQSDLRFT FQPLVGRSEF EVVSFELDEA ISTPFQLQLE LISFEDAVDF GQLLDKPVLF
TLWRGERPLR YVHGLVSTFS QGETGFHRTR YHALVEPVLA RAGLRSNWRI FQQKTVSQIL
EIMLKRQGVN AYQLKCIDQH QVREFCVQAG ETDLDFIARL AAEEGLVYRF EHTPKGHTLI
ITDRLLALGQ ISQGVIKADD EDEGFFEQAD IDPNQVLYHA NSAGDQAIPC LRHLRYSEQV
RTARQVQRDH TFTHPAYRLE LRAEGGDLAH QSTAYERFDY PGRYKREAVG VPFTATRITA
LRHDARMAEV EGDDVRLQPG LSFTLIEHPR EDLNLHWRVT RVHHEGTQFT SLQEEAAGAQ
LGTRYKQDAV LVPGRTEWRP APLPKPRIDG PHMATVVGPK GEEIYCDQWG RVKVSFPWDR
ESENNEFSSC WVRVSQGWAG GSWGSMAIPR IGQDVIIQYV NGDPDQPMIT GRTYCGNQLP
PYDLPEHKTR MTIKSQTHKG DGYNELRFED ELGKEEVFIH AQRDQNNVVG NDETTRVGRN
RIEQVGQDQQ LNIGNDYRQD TARDHTQVIG QNCLVDIKHN LIETVGNDHR ESTGANYHAF
IGKDSELVVK GAQKVKVGQG MEQRTTVYQL WASERIELRT PGGSLVLDEQ GITLNGLTLD
LLGQTKAVAK GDGNTQSLAL RPEAGTTCEA KS
|
|---|
| |