| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_2752 |
|---|
| Symbol | |
|---|
| ID | 5870540 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | - |
|---|
| Start bp | 3086288 |
|---|
| End bp | 3087598 |
|---|
| Gene Length | 1311 bp |
|---|
| Protein Length | 436 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 641547873 |
|---|
| Product | major facilitator transporter |
|---|
| Protein accession | YP_001668985 |
|---|
| Protein GI | 167033754 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 0.419621 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 0.295162 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAGACTT CGAGCACCGG CGTGTCGCGT ACCCGGCAAG TGGTCGCCGC CGTTATCGGC
AATGCCCTGG AATGGTATGA CTTTATCGTG TACGGCTTTT TGGCCAGTAT CATTGCCCGG
CAGTTTTTCC CGTCCGACGA TGAATACGCT TCGCTGCTGA TGGCCTTGGC CACCTTCGGC
GTCGGCTTTT TCATGCGCCC GGTGGGTGGC GTGTTGTTGG GCATGTATTC CGATCGCAAG
GGCCGCAAGG CGGCCATGCA GATGATCATC CGCCTGATGA CCGTGTCGAT CGCGATGATC
GCCTTTGCCC CCGACTACCT GGCCATCGGC ATGGCGGCGC CGCTGTTGAT CGTGGTCGCG
CGCATGCTGC AGGGCTTTGC CACGGGTGGC GAGTATGCCA GCGCTACGGC GTTTCTGGTG
GAAAGCGCGC CGGCCCACCG CAAGGGGCTA TATGGCTCGT GGCAATTGGT AGGGCAGTGC
CTGGCGGTGT TCTCCGGCGC GGCCATGGTG GCCCTGGTTA CTCACCTGTG CACGCCTGAA
GCGCTGGACA GCTGGGGCTG GCGTATTCCC TTCGTGCTGG GCCTGCTGAT CGGCCCGGTG
GGGCTGTGGA TTCGCAAACA CATGGAAGAG CCCGAAGAGT TCGTCGAGGC GCGCCGCCAG
GCCAAGGGGC AGTCGCCCAG CCTGTGGCAG GTACTGCGTG AACATCGGCG TAGCCTGCTG
GTGTCGATGG GCCTGGCCTG TGGCGCGACG GTGTCGTTCT ACGTGGTGTT GGTGAACATG
CCGACCTTCG CCCACAAAAA CCTTGGGCTG CCGCTGGACC AGGTGCTGCT GGTACAGATG
CTCGCGGTCG GGCTGATGAC CGTGGTGATT CCGTTGTCTG GCGCGCTGTC TGACCGGTTG
GGTCGGCGCC CGGTGCTGAT GGCCTTCACC CTGGCGTTCT TCGTGATGGT CTACCCGCTG
TATGTGTGGG TGGCCGCCGC GCCCTCCGTG GAGCGGCTGC TGGTCATGCA ACTGCTGCTG
TGCACCGCCA TTGGCGGCTT CTTTGGCCCG GCACCTACCG CCTTGGCCGA GCAGTTCCCG
GTCGAGGTGC GTTCCACTGG CGTGTCGGTG GCCTATAACG TAGCGGTAAT GGTGTTCGGC
GGCTTTGCCC CGTTGATCGT GACCTGGCTG AGCAAAGTGC TGGGAACCCC GGTGGCGCCA
TCGTTCTACG TGCTGTTCGC CTGCCTGCTG ACGCTGTTGG CTACCTACTG CCTGAAAGAA
GCACCCCGAG CGGGCCAGCC TGCCACTTTC AACCTTGGAG TAAAACCGTG A
|
|---|
| Protein sequence | MQTSSTGVSR TRQVVAAVIG NALEWYDFIV YGFLASIIAR QFFPSDDEYA SLLMALATFG
VGFFMRPVGG VLLGMYSDRK GRKAAMQMII RLMTVSIAMI AFAPDYLAIG MAAPLLIVVA
RMLQGFATGG EYASATAFLV ESAPAHRKGL YGSWQLVGQC LAVFSGAAMV ALVTHLCTPE
ALDSWGWRIP FVLGLLIGPV GLWIRKHMEE PEEFVEARRQ AKGQSPSLWQ VLREHRRSLL
VSMGLACGAT VSFYVVLVNM PTFAHKNLGL PLDQVLLVQM LAVGLMTVVI PLSGALSDRL
GRRPVLMAFT LAFFVMVYPL YVWVAAAPSV ERLLVMQLLL CTAIGGFFGP APTALAEQFP
VEVRSTGVSV AYNVAVMVFG GFAPLIVTWL SKVLGTPVAP SFYVLFACLL TLLATYCLKE
APRAGQPATF NLGVKP
|
|---|
| |