| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_2589 |
|---|
| Symbol | |
|---|
| ID | 5870378 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | + |
|---|
| Start bp | 2909379 |
|---|
| End bp | 2910167 |
|---|
| Gene Length | 789 bp |
|---|
| Protein Length | 262 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 641547712 |
|---|
| Product | LuxR family transcriptional regulator |
|---|
| Protein accession | YP_001668824 |
|---|
| Protein GI | 167033593 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 0.658278 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 0.222146 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATTTTA CGCTGCACGA CATTGCCTGG CACCGAGCGG TGGGCCAACT GATCGAAACG
CTCGATAAAG CGCATTTCTG GCCTGCCCTG GTGCGGCTGT TGAACGAATA CGTGCCCTGC
GACAGTTGGG TCGCGCTGCT GTTTTCGGCG GGGCAACCGC AGGTGTTTGC CGAATGCCCC
AGCGAGGACG GCAACCCTGA TCCGCTGTTC CAGGATTACT TGAACGGCCT GTACCTGCTG
GACCCCTTCT ATGTGGCCAG CCGCGAAGCT GCGGCATCTG GCCTGGTGCG GCTGGCGGAC
GTCGCCCCCG AGTGCTTCGA GCAGACTGAT TACTACCAGC GCTACTTTCG CCTCAACGTG
GTAGCGGATG AAATTCAGTT CAACGTGCAA CTGGATGCGC AACGCACGCT TTGCCTTTCA
CTTGGCTGCA AACGCCGTTT CACCCTTGAA CAGGTCACCC TGCTGGAACT GTTGCGGCCT
TGGGTGTCTG GCCTGATGCG CCAGCGCATG GCTTTCGAGC GAGAGTTGCT GGAGGCGGCC
ACCAAGCCTG CGCCGCACTG GCAAAGCCGC ATGGAGGAGA AGGTTGAGCA GATGCAGTCG
CCGCTGACCG GACGTGAGCT GGAAGTGGGC CGGCTGATGC TCAGCGGCTG TTCGAGCAAG
GAGATTGCGC GCAAGCTGGA AATCTCTGTC GAAACCGTAA AGGTGCACCG CAAGCATATG
TACAGCAAGC TGGGGATCAA GTCGCAATCG GAGTTGTTTT CGCTGTTTCT TCAGGCCCAA
CTGGGTTGA
|
|---|
| Protein sequence | MNFTLHDIAW HRAVGQLIET LDKAHFWPAL VRLLNEYVPC DSWVALLFSA GQPQVFAECP
SEDGNPDPLF QDYLNGLYLL DPFYVASREA AASGLVRLAD VAPECFEQTD YYQRYFRLNV
VADEIQFNVQ LDAQRTLCLS LGCKRRFTLE QVTLLELLRP WVSGLMRQRM AFERELLEAA
TKPAPHWQSR MEEKVEQMQS PLTGRELEVG RLMLSGCSSK EIARKLEISV ETVKVHRKHM
YSKLGIKSQS ELFSLFLQAQ LG
|
|---|
| |