| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_2516 |
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| Symbol | |
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| ID | 5870305 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | - |
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| Start bp | 2827112 |
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| End bp | 2828302 |
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| Gene Length | 1191 bp |
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| Protein Length | 396 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 641547639 |
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| Product | type II secretion system protein |
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| Protein accession | YP_001668751 |
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| Protein GI | 167033520 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1459] Type II secretory pathway, component PulF |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 30 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 0.136161 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGCTACA GCCTCAAGGC CCTGGGCAGG CAGGGCGTGG TGCAGTTGCA GATCGACGCC
GAAGACGCCG AGCAGGCTCG CCGCCAGGCC GAAGACCAGG GCCTGCGCGT GCTCAGCCTG
CGCGGCAGCG GCGGCTCCTT GCGTGGTATG GCCTGGCGCC GCGAAGCGGC GTTTGACCTG
GTGCTGTTCA GCCAGGAATT GTCGACCCTG CTCAATGCCG GCCTGCCGCT GATCGACGCA
CTGGAAAGCC TGGCAGAGAA GGCCCCTTCG CCTGCAACGC GCAAGGTGCT GGCCGAACTG
GTACGCCAGT TGTACGAAGG CCGCTCGCTG TCCCAGGCCC TGGGCCAGCA ACCCCGTGTA
TTCCCGCCGC TGTATGTAGC GCTGGTGCAG TCCAGCGAGC GCACCGGCGC GCTGGGTGAC
GCCCTCGCCC GCTACATCAG CTACCGCCAA CGCCTGGACC TTGTGCGGCA GAAACTGGTC
GGTGCCTCGG TCTACCCGTT GTTGCTGTTG CTGGTGGGAG GCGGCGTGGT GCTGTTCCTG
CTCGGCTACG TGGTGCCGCG CTTCAGCCAG GTATTCGAAG GCATGGGCAC CGAGCTGCCC
TGGCTATCAC GGGTGCTGAT GCAGATCGGC CTGTTCCTGC ATGCCCAGCA ATTGCCCCTG
GCGCTGGGCA CCGTCGGCGG GGTCACGGCG CTTTGGCTGT TGCGGCGTCA TCCGCGTGTA
CGGCATTGGG CCTCCTGCCA GTTACGGCGC CTGCCAGCAC TGCACCAGCG TCTGATGATG
TACGAGCTGG CGCGCTTCTA TCGCTCGCTG GGCATACTGC TGCAAGGCGG TATTCCCATC
CTCACCGCCA TGGGCATGGC CCGCGGCCTG CTCGGCAGCG CAGCAGCGCA GGGCCTGGCG
CAAGCCAGCC AGCGGGTGGG CGAAGGGCTG CCCCTGTCCG ATGCACTGGA GGCCGGGCAC
CTGGTTACAC CGGTATCGCT GCGCCTGCTG CGGGCCGGCG AGCAGTCGGG CAACCTGGGC
GAGATGCTGG AACGCTGCGC CGACTTCCAT GACCAGGAAA TCGGCCGCTG GGTGGAATGG
TTCGTCAAAC TGTTCGAACC CCTGCTGATG ACCTTCATCG GCTTGCTGAT CGGCCTGATC
GTGATCCTCA TGTACATGCC GATCTTCGAG CTGGCCTCGA GCATTCACTG A
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| Protein sequence | MRYSLKALGR QGVVQLQIDA EDAEQARRQA EDQGLRVLSL RGSGGSLRGM AWRREAAFDL
VLFSQELSTL LNAGLPLIDA LESLAEKAPS PATRKVLAEL VRQLYEGRSL SQALGQQPRV
FPPLYVALVQ SSERTGALGD ALARYISYRQ RLDLVRQKLV GASVYPLLLL LVGGGVVLFL
LGYVVPRFSQ VFEGMGTELP WLSRVLMQIG LFLHAQQLPL ALGTVGGVTA LWLLRRHPRV
RHWASCQLRR LPALHQRLMM YELARFYRSL GILLQGGIPI LTAMGMARGL LGSAAAQGLA
QASQRVGEGL PLSDALEAGH LVTPVSLRLL RAGEQSGNLG EMLERCADFH DQEIGRWVEW
FVKLFEPLLM TFIGLLIGLI VILMYMPIFE LASSIH
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