| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_2386 |
|---|
| Symbol | |
|---|
| ID | 5870175 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | - |
|---|
| Start bp | 2670183 |
|---|
| End bp | 2671061 |
|---|
| Gene Length | 879 bp |
|---|
| Protein Length | 292 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 641547509 |
|---|
| Product | AraC family transcriptional regulator |
|---|
| Protein accession | YP_001668621 |
|---|
| Protein GI | 167033390 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG2207] AraC-type DNA-binding domain-containing proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 33 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 35 |
|---|
| Fosmid unclonability p-value | 0.939671 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAATCCA CCCTCCCCGG CGTCCCGTTG TTCAAGCTGT ATGGCGAAAA CCAGGCGTGG
CCCGGCACTG ACCTGATGCA TTGCGAATCG ATCCCGGCAC GCAGCCGCCT GCATCACTGG
GAGATCAAGC CGCACCAGCA TGCCGAGCTG TTCCAATTGC TGTATGTGCA GCGCGGCCAG
GCCCAGGTGG AGATCGAGGG GGTGCGCAGT GCCATCGATG AGGCGGCGAT CCAGGTGGTA
CCGCCGATGA CCGTGCATGG CTTTCGCTTC AGCGCCGATA TCCAGGGCTA CGTGCTGACC
TTCGGCACTG CGCTGGTAGC GAATCTGGAA CAACGCCTGG GTGCGCCACT GACCGTGCTG
GCACAACCTG CCTGTTACCC GCTGGGGCAT GAGCGCGTGC ACCTGCGCAG CCTGATCGAC
ACCCTGCAGC AGGAGTACCA GGGCAATGCC CCGGCGCGCG CGGCAATGCT TGAAGCATTG
GTTACCGCGC TTATGGTATG GATCAGCCGC CGCCAACAGT TGGGGCAAGC GCCACGTAAC
CGCGATGAGC GTGACCGCCT GTTGCTGGGG CAGTATTTGC GCCTGGTTGA AGCGCATTAT
CGCGAGCATC TGTCGGTAGA GGATTTTGCC GCGCGGCTGA ATGTACCGAG CTTGCAGCTT
AACCAGCTGT GCCGGGCGCT CAGTGGCCAG ACTGCGCTGC AGGTTGTGCA CCAGCGTTTG
TTGCTGGAGG CTCGGCGTAA CCTGATTTAT ACGCGGATGA GCATCGGGCA GTTATCGGAT
AGCCTGGGGT TCACCGACCC GACTTACTTT GCGCGGTGGT TCAAGCGTTT GAGCGGGCAG
ACGCCCAATG GATATCGGCG ATCGGGGCAG CCTGACTGA
|
|---|
| Protein sequence | MKSTLPGVPL FKLYGENQAW PGTDLMHCES IPARSRLHHW EIKPHQHAEL FQLLYVQRGQ
AQVEIEGVRS AIDEAAIQVV PPMTVHGFRF SADIQGYVLT FGTALVANLE QRLGAPLTVL
AQPACYPLGH ERVHLRSLID TLQQEYQGNA PARAAMLEAL VTALMVWISR RQQLGQAPRN
RDERDRLLLG QYLRLVEAHY REHLSVEDFA ARLNVPSLQL NQLCRALSGQ TALQVVHQRL
LLEARRNLIY TRMSIGQLSD SLGFTDPTYF ARWFKRLSGQ TPNGYRRSGQ PD
|
|---|
| |