| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_2162 |
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| Symbol | |
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| ID | 5869951 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | - |
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| Start bp | 2408253 |
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| End bp | 2409353 |
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| Gene Length | 1101 bp |
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| Protein Length | 366 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 641547287 |
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| Product | putative sigma54 specific transcriptional regulator |
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| Protein accession | YP_001668399 |
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| Protein GI | 167033168 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 0.0332569 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 0.224007 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAACTGC TGACCCTCCC CCCGTCACCG ACACTGGCTA CCTCGATCCG GGCGACCGCA
CAGGTCTTCG AAGACCCAAG GTCGCAGGCG CTGCTCGCCC ACCTGCAACA GGTCGCCCCC
AGCGAGGCCA GCGTCCTGAT CATCGGCGAA ACCGGCACGG GCAAGGAGCT GGTCGCACGC
CACATCCACA ACCTCAGCGG TCGGCGCAAC GGCCCGTTCG TTGCGGTCAA CTGCGGCGCA
TTTTCCGAGT CGCTGGTGGA AGCCGAACTG TTCGGCCATG AAAAGGGCGC CTTCACCGGC
GCCCTCGCGG CCAAGGCCGG CTGGTTCGAA GAGGCCAACG GCGGCACCTT GTTCCTCGAC
GAAATTGGCG ACTTGCCGCT GCCGATCCAG GTCAAGCTGC TGCGTGTACT GCAAGAACGC
GAAGTGGTGC GGCTGGGCTC GCGCAAGAGC ATCCCGATCA ACGTGCGGGT CCTGGCGGCG
ACCAACGTAC AGCTGGAAAA GGCCATCAAC GCCGGACATT TCCGTGAAGA CCTGTACTAC
CGGCTGAACG TGGTGACGTT GCAGTTGCAC CCGTTGCGCG ACCGTCCGGG CGACATCCTG
CCACTGGCCC GGCATTTCAT CCGCAGTTAC AGCGACCGGT TGGGCTACGG GCCGGTGGAA
CTGAGCCCCA AGGCCCAGGC CAAGCTGGTC GAGTACAGTT GGCCGGGCAA CATCCGTGAG
CTGGAAAACG TGATTCACCA CAGCTTGTTG ACCTGTGGCG ATGGCACGGT GCAAGCGCAG
GACCTGCGTT TGTCCAACTT GCGTATCGAA CGGCAAGAGG AGGAGCCGGC AGGCAATGGC
GTGGATGACT TGCTACAGCG CGCGTTCAGC CGGCTGTACG AGGAGCAGTC GGGTGATCTT
TACGAGAAGG TGGAAAATGC CCTGCTGCGC TCGGCGTACC GGTTCTGCCA TTACAACCAG
GTGCATACCG CGCAGTTGCT GGGGTTGTCG CGCAACATCA CGCGCACCCG GCTGATTGCG
ATTGGTGAGC TTGTAGTGAA CAAGCGGCGG GGACAGGAGC AACAGGTGCT GGACAACCGG
GTGGTGCGGT TGTCGATTTG A
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| Protein sequence | MQLLTLPPSP TLATSIRATA QVFEDPRSQA LLAHLQQVAP SEASVLIIGE TGTGKELVAR
HIHNLSGRRN GPFVAVNCGA FSESLVEAEL FGHEKGAFTG ALAAKAGWFE EANGGTLFLD
EIGDLPLPIQ VKLLRVLQER EVVRLGSRKS IPINVRVLAA TNVQLEKAIN AGHFREDLYY
RLNVVTLQLH PLRDRPGDIL PLARHFIRSY SDRLGYGPVE LSPKAQAKLV EYSWPGNIRE
LENVIHHSLL TCGDGTVQAQ DLRLSNLRIE RQEEEPAGNG VDDLLQRAFS RLYEEQSGDL
YEKVENALLR SAYRFCHYNQ VHTAQLLGLS RNITRTRLIA IGELVVNKRR GQEQQVLDNR
VVRLSI
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