| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_2159 |
|---|
| Symbol | |
|---|
| ID | 5869948 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | - |
|---|
| Start bp | 2405254 |
|---|
| End bp | 2406753 |
|---|
| Gene Length | 1500 bp |
|---|
| Protein Length | 499 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 641547284 |
|---|
| Product | glycolate oxidase subunit GlcD |
|---|
| Protein accession | YP_001668396 |
|---|
| Protein GI | 167033165 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0277] FAD/FMN-containing dehydrogenases |
|---|
| TIGRFAM ID | [TIGR00387] glycolate oxidase, subunit GlcD |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 0.251033 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATATCC TGTACGACGA GCGCGTCGAT GGCGCGTTGC CCAACGTGAA CCAGGCTGAC
CTGTTGCAGG CGCTGCGCGA TGCCCTGTCA GACCTCGAAA TCCTGTACCG CGAAGAAGAC
CTCAAACCCT ACGAATGCGA CGGCCTGTCG GCCTACCGCA CCGTGCCACT GCTGGTGGTG
CTGCCCGAGC GCCTGGAGCA GGTGCAAACA CTGCTGAAAC TGTGCCACCA ACGTGGCGTA
CCGGTGGTCG CCCGAGGCGC CGGTACCGGC CTGTCGGGCG GTGCCCTGCC GCTGGCGAAG
GGCATCCTGC TGGTGATGGC GCGCTTCAAT CGTATCCTTG AGGTGAACCC GCAGGGTCGC
TACGCCCGTG TGCAGCCGGG CGTGCGCAAC CTGGCCATCT CCCAGGCCGC CGCACCTCAT
GGTATGTACT ACGCACCAGA CCCCTCCTCG CAAATAGCCT GCTCCATCGG TGGCAACGTC
GCCGAAAATG CCGGTGGCGT GCACTGCCTC AAGTACGGCC TGACCGTGCA CAACCTGCTC
AAGGTGGAAA TCCTCACGGT CGAGGGCGAG CACCTGACCC TCGGCAGCGA TGCCCTGGAC
AGCCCAGGTT TCGACCTGCT GGCGCTGTTC ACCGGCTCCG AAGGCATGCT GGGTATCGTC
ACCGAAGTTA CCGTCAAGCT GCTACCCAAG CCCCAGGTGG CGCGAGTGCT GCTGGCCAGT
TTCGACAGCG TCGAGGACGC CGGCCGGGCA GTCGCCGACA TCATCGCGGC CGGCATCATC
CCCGGCGGCC TGGAGATGAT GGACAACCTG GCGATCCGCG CCGCCGAGGA CTTCATCCAC
GCTGGCTACC CGGTGGACGC GGCGGCGATC CTGCTGTGCG AGCTGGATGG CGTGGAGGCC
GACGTACACG ACGACTGCGC GCGGGTCGCC GACGTACTGA CGCATGCCGG GGCCCGCGAG
GTGCGCCTGG CCTGCGACGA AGCCGAGCGC GTGCGCTTCT GGGCCGGGCG CAAGAACGCC
TTTCCAGCGG TAGGGCGCAT CTCCCCGGAC TACTACTGCA TGGACGGCAC CATCCCGCGC
CGCGAACTGC CCCGGGTGCT CAAGGGTATC AGTGACCTGT CCGCTGAATA CGGCCTGCGC
GTGGCCAATG TGTTCCATGC CGGCGACGGC AACATGCATC CGCTGATCCT GTTCGATGCC
AACCGCCCCG GCGAGCTGGA GCGTGCCGAA GCCATCGGCG GCAAGATCCT CGAACTGTGC
GTGGCAGTGG GCGGCAGCAT CACCGGTGAA CATGGCGTGG GCCGCGAGAA GATCAACCAG
ATGTGCGCGC AGTTCAACAG CGACGAAATC ACCCTGTTCC ACGCGGTGAA GGCCGCCTTC
GACCCGCAGG GCCTGCTCAA CCCCGGCAAG AACATTCCCA CCTTGCACCG CTGCGCCGAA
TTCGGCGCCA TGCATGTGCA CCATGGGCAG CTGCCCTTCC CCGAACTGGA GCGTTTCTGA
|
|---|
| Protein sequence | MNILYDERVD GALPNVNQAD LLQALRDALS DLEILYREED LKPYECDGLS AYRTVPLLVV
LPERLEQVQT LLKLCHQRGV PVVARGAGTG LSGGALPLAK GILLVMARFN RILEVNPQGR
YARVQPGVRN LAISQAAAPH GMYYAPDPSS QIACSIGGNV AENAGGVHCL KYGLTVHNLL
KVEILTVEGE HLTLGSDALD SPGFDLLALF TGSEGMLGIV TEVTVKLLPK PQVARVLLAS
FDSVEDAGRA VADIIAAGII PGGLEMMDNL AIRAAEDFIH AGYPVDAAAI LLCELDGVEA
DVHDDCARVA DVLTHAGARE VRLACDEAER VRFWAGRKNA FPAVGRISPD YYCMDGTIPR
RELPRVLKGI SDLSAEYGLR VANVFHAGDG NMHPLILFDA NRPGELERAE AIGGKILELC
VAVGGSITGE HGVGREKINQ MCAQFNSDEI TLFHAVKAAF DPQGLLNPGK NIPTLHRCAE
FGAMHVHHGQ LPFPELERF
|
|---|
| |