| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_1939 |
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| Symbol | prpD |
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| ID | 5869728 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | + |
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| Start bp | 2180599 |
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| End bp | 2182083 |
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| Gene Length | 1485 bp |
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| Protein Length | 494 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 641547065 |
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| Product | 2-methylcitrate dehydratase |
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| Protein accession | YP_001668178 |
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| Protein GI | 167032947 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG2079] Uncharacterized protein involved in propionate catabolism |
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| TIGRFAM ID | [TIGR02330] 2-methylcitrate dehydratase |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 0.73412 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.000318098 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAGCGCCA ACGTAGACCT CAATGACCGC CCGGACTACG ACCGGGTGCT GCAAACCCTG
GCCGACTACG CCCTCGGTTA TCGGGTCGAT TCCGCTGAAG CCCTGGACAC CGCGCGCAAC
TGCCTGATGG ACACCCTGGG CTGCGGTCTT CTCGCCTTGC GCTTCCCTGA GTGCACCAAG
CTGCTGGGGC CATTGGTGGA AGGTACCGTG GTGCCCCATG GGGCTCGCGT TCCTGGCACC
GCCTACCGCC TCGATCCGGT CAAGGCTGCC TGGGATATCG GTTGTGCCGT GCGCTGGCTG
GACTATAACG ACACCTGGCT GGCCGCCGAA TGGGCTCACC CTTCAGACAA CCTTGGCGGC
ATCCTGGCCG TTGCTGATCA CCTGTCACAA AAGCGCGTGG CCGCTGGTGA AGCGCCGTTG
CTGATGCGTG ATGTGCTCGA AGCCATGGTC ATGGCCCACG AGATTCAGGG TGTGCTGGCG
CTGGAAAACT CGTTCAACCG TGTTGGGCTC GACCACGTGA TTCTGGTGAA GGTAGCCTCG
ACCGCCGTGT GCGCCAGGCT GATGGGGGCC AACCGCGAGC AGATGCTCTC GGCCTTGTCC
CACGCCTTCG TCGACGGCCA GGCCCTGCGC ACATACCGCC ATGCGCCCAA CGCGGGCTCA
CGCAAGTCTT GGGCCGCGGG TGATGCGTCC AGCCGGGGCG TGCGCCTGGC CGATATCGCC
TTGCGTGGCG AGATGGGCGT GCCGGGTGTG CTTACGGCGC CGCAATGGGG CTTCTACGAC
GTATCGTTCA GCCATACCAA CAAGGACTTG GCGCTCAAGC CTGCTGGGCA GTACGAGCTG
CGTCTGCCCC AGGCCTTGGG CAGCTATGTG ATGGAAAACG TGCTGTTCAA GGTCAGCTTT
CCTGCCGAGT TTCATGCTCA GACCGCCTGT GAGGCGGCCG TCACCCTGCA TCCGCGTGTA
CGAAACCGCC TGCACGAAAT CGACCGCATC GTCATCACCA CCCAGGAGTC GGCGATCCGC
ATCATTTCCA AAAGCGGCCC GCTGGCCAAC GCCGCCGACC GCGACCATTG CCTGCAGTAC
ATGGTGGCGG TGCCGCTGAT CTTCGGCCAT TTGGTGGCTG AGCATTATGA GGATGCCTTC
CATGCCAACC ACCCGAGCAT CGATCGTTTG CGCGAGAAGA TGGAGGTGGT GGAAGACCCG
CGCTTCAGCC GCGAGTACCT GGAACCGGAC AAGCGTTCGA TCGCTAACGC GCTGCAGGTA
TTCTTCAAGG ATGGCAGCAG CACCGAGCAA GTGCTGGTGG AGTATCCGAT CGGGCATCGG
CGGCGGCGTG GAGAAGGCAT ACCGTTGCTG GAGGCCAAGT TCAGGGCCAA CCTGGCGACC
CGTTTCGCGC GGCAGCGGTG TGGCGAGATT GGAGAGCTGT GCAAGGACCA GCAGCGGCTG
GAGCGCACAG CGGTGCACGG GTTCGTGGAT TTGTTCGTGA TCTGA
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| Protein sequence | MSANVDLNDR PDYDRVLQTL ADYALGYRVD SAEALDTARN CLMDTLGCGL LALRFPECTK
LLGPLVEGTV VPHGARVPGT AYRLDPVKAA WDIGCAVRWL DYNDTWLAAE WAHPSDNLGG
ILAVADHLSQ KRVAAGEAPL LMRDVLEAMV MAHEIQGVLA LENSFNRVGL DHVILVKVAS
TAVCARLMGA NREQMLSALS HAFVDGQALR TYRHAPNAGS RKSWAAGDAS SRGVRLADIA
LRGEMGVPGV LTAPQWGFYD VSFSHTNKDL ALKPAGQYEL RLPQALGSYV MENVLFKVSF
PAEFHAQTAC EAAVTLHPRV RNRLHEIDRI VITTQESAIR IISKSGPLAN AADRDHCLQY
MVAVPLIFGH LVAEHYEDAF HANHPSIDRL REKMEVVEDP RFSREYLEPD KRSIANALQV
FFKDGSSTEQ VLVEYPIGHR RRRGEGIPLL EAKFRANLAT RFARQRCGEI GELCKDQQRL
ERTAVHGFVD LFVI
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