| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_1831 |
|---|
| Symbol | |
|---|
| ID | 5869611 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | + |
|---|
| Start bp | 2053674 |
|---|
| End bp | 2055122 |
|---|
| Gene Length | 1449 bp |
|---|
| Protein Length | 482 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 641546948 |
|---|
| Product | transcriptional regulator |
|---|
| Protein accession | YP_001668070 |
|---|
| Protein GI | 167032839 |
|---|
| COG category | [E] Amino acid transport and metabolism
[K] Transcription |
|---|
| COG ID | [COG1167] Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 33 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 38 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCCCAAGG TTGGGTTCAA TGCCGTCTCT GGCGCCGTTA TGGAAAACAG CCAAATCGAC
AAGCCCAACT TTACCTACCA GGCGGTCTAC CGCTACTTGC TCGACAGGAT CGAGGCCGCA
CCTGCCGATG TGGAGCAGCG TCTGCCGTCG CTGCGCCAAC TTGCGCGGCA ATTGCATGTT
TCGGTATCGA GTACCCAGTA CGCCTATGCG CTGCTCGAAG ACGAAGGGCG GGTGTATGCT
CGGCCAAAGC AGGGCTACTT CAGCCGAGCC CGTCCCACCA CCATCTGTGT GCAGCATTCG
GAAAACCTGC TCGACACCGT ATTCGCCAGC GCCCGACAGC CGGGTATGTT GGCCTTGGGC
AGCGATGCGC CGGCCATGTT GCTGTCGCTG CAGCAGCCGC TGCTGATGAT CGAGCGCGAA
CTGGCGCGTC AATACCCGCA TTCTTTGGCG CCGCTGTATC AGCCCTTCGG TGAGCCCGAG
TTGCGCACGG TACTGGCCGA CCGCTACACC CGCTCGGCAC AGCAGTATTG GAGCGCCGAT
CACGTGTTCA TCGGCGCGGA CCTGCGCAGT GTGCTGGAAG TGTCCTTACG CGCCCTGGGC
CTCGAAGGCC AGCTGGCATT GGTGGAGTCG CCCTGCAACT GGGCAGTGCT GAGGCAATTG
CAGGCTGCGC GCATGACCAT CATCGAAGTG CCCTTGGGTG ATGACGGGCG TTTCGACTTG
CAGCAGGTTC ACCGGCTGTT GCGCGATCAG CCAATACGCC TGGCCGTGCT GTCGTCGGCG
GCCAACGTAC CCCAGGGTGG TCTGATGCCT GCGTCAGACA AGCAGCTGGT CTGCCGCTGG
CTTGCCAAGC ACGCTGTGTG GCTGTTTGAA AACGATGGCT ACGGCGAGTT GTGCTTCCAC
GCCGGAGCAC CGCGCTACCG GGACTTCGCC GACCCTGACC GGCTGCTGGT GTTTTCGACC
TTCGACAAAC TGATTGGCGC AGAGGCGCCC TTTGGCTACC TGCTTTGTCG CAAGCAGACC
GAACGCTTTC AGCAGCTGTT CCTGGAACGA GCCTTTCGCT TGTCGCCGAT CCGCCAAAGG
GCCATCGCCC GGCTTTTCAC CTCGCGTCGG GTCGAGTTGC ATGTGCAGCG TTTGCTGCCG
AAGTTGCGCG AGCGTTTACA GCAGATGAGG CGGCTACTGG AAGCGCACGG CCAGGGCTGC
CTGCGCATCG CCGAGTCGCA GGGCGGGGCC AGCCTGTGGC TGCAGGCGAC CCGGCCGGTG
GATATGCGCC GGGTCTTCGA GCGGTTGCTG GCGCAGCGTA TCGTCATTGC GCCCGGTGAA
ATTTTCAGCC AGTGCGGCCT TTGGCGCAGT CATCTGCGGC TGTGCTGCAC GGTGGACTGG
AGCAAGGATA TCGCCCAGGC GCTGCAATGC CTGGTCAAGG CCATCGAGGA TGAACTTCAC
ACTCCGTAA
|
|---|
| Protein sequence | MPKVGFNAVS GAVMENSQID KPNFTYQAVY RYLLDRIEAA PADVEQRLPS LRQLARQLHV
SVSSTQYAYA LLEDEGRVYA RPKQGYFSRA RPTTICVQHS ENLLDTVFAS ARQPGMLALG
SDAPAMLLSL QQPLLMIERE LARQYPHSLA PLYQPFGEPE LRTVLADRYT RSAQQYWSAD
HVFIGADLRS VLEVSLRALG LEGQLALVES PCNWAVLRQL QAARMTIIEV PLGDDGRFDL
QQVHRLLRDQ PIRLAVLSSA ANVPQGGLMP ASDKQLVCRW LAKHAVWLFE NDGYGELCFH
AGAPRYRDFA DPDRLLVFST FDKLIGAEAP FGYLLCRKQT ERFQQLFLER AFRLSPIRQR
AIARLFTSRR VELHVQRLLP KLRERLQQMR RLLEAHGQGC LRIAESQGGA SLWLQATRPV
DMRRVFERLL AQRIVIAPGE IFSQCGLWRS HLRLCCTVDW SKDIAQALQC LVKAIEDELH
TP
|
|---|
| |