| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_1610 |
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| Symbol | |
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| ID | 5869390 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | - |
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| Start bp | 1820058 |
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| End bp | 1821515 |
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| Gene Length | 1458 bp |
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| Protein Length | 485 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 641546728 |
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| Product | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase |
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| Protein accession | YP_001667851 |
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| Protein GI | 167032620 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG2027] D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4) |
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| TIGRFAM ID | [TIGR00666] D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.0216691 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 0.354218 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATCAAAA CGCTTCGTCC CCTCTTTCTC GCCGGCTTGC TGTTGCCAAT TGCCTTGCCC
AGCCACGCCG CCGCCGTCAA TACCACCCTG CCTGCCAAAG TGCAGCAGGC ACTCAAGGCC
AACAAGCTGC AGGACACTGC GCTGTCGCTG GTGATGCTGC CGCTGGACGG CCCCGGAACC
CCGACCGTGT TCAATGCCGA TGTTTCGGTG AACCCGGCCT CGACCATGAA ACTGGTCACC
ACTTACGCCG CCCTCGAGCT GCTGGGCCCG ACCTTTCAGT GGAAAACCGA GTTCTATACG
GACGGCACCC TGAGCAACGG GGTGCTCAAC GGTAACCTGT ACCTCAAAGG TGGCGGGGAC
CCCAAACTGA ACATGGAAAA GCTGTGGTTG CTGATGCGTG ACCTGCGCGC CAATGGCGTG
CGCACCGTCA CCGGTGACCT GGTGCTGGAC CGCAGCCACT TCGTGCAGCC CAACCTGCCG
CAGTTCAACG ACGACGGCGG GGATGAAAAC AAGCCGTTCC TGGTCAAGCC CGACTCGCTG
CTGGTCAACC TCAAGGCCCT GCGCTTCGTC GCCCGTAACG ACGGCGGCAA AGTTACCATC
GCAGTGGAAC CACCGATTGC CAGCATCCGT ATCGACAACC AGGTCAAGGC CGTGGCATCG
AAACAGTGCA CCGGTGATGT GCGCTACAAC CCGGTGCCCC AGGCCGACGG CATCAGCGTG
ACGGTCAGCG GCCAGTTGGG TGACGGCTGC AACTCGCAGA CTTACCTTTC GCTGCTCGAC
CACCCGACTT ACGCCGCCGG TGCCGTGCGC GCGATCTGGA ACGAACTGGG TGGCAGCATT
CAGGGTGGCG ACCGCATCGA GAATGTTCCC AAAAGCGCTC GCTTGCTGGC CCGCGCCTTC
TCGCCAGACC TGGTGGAGGT GATCCGCGAC ATCAACAAAT ACAGCAACAA CACCATGGCC
CAGCAGCTGT TCCTGAGCCT TGGCGCGCAG TTCCGCACCG ATGCCGATGG CGACGACGCC
CGCGCCGCCC AGCGCGTGGT GCGCCAATGG CTGGCCAAAA AGGGTATTAC CGCGCCGCAC
CTGGTAATGG AAAACGGCTC TGGCCTGTCG CGTGCCGAAC GGGTCAGTAC CCGGGAAATG
GCTGCCATGC TGCAGGCTGC CTGGAAGAGC CCTTACGCTG CCGAGTTCAT GAGCTCGATG
CCGCTGGTGG GCATGGACGG CACCATGCGC AAGCGCTTGA AGCGCACCGC CATGACCGGT
GAAGGGCACA TCAAGACCGG TACGCTGAAC ACCGTACGGG CGATTGCCGG TTTCAGCCGC
GACAGCAACG GCCATACCTG GGCGGTGGCG GCGATCCTCA ACGACCCAAA ACCGTGGGGC
GCCTCGCAGG TGCTGGACCA GGTGTTGCTG GACCTGTATC GCCAGCCGAA GCTGGCTGGC
AGCACAGCGG CCAACTGA
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| Protein sequence | MIKTLRPLFL AGLLLPIALP SHAAAVNTTL PAKVQQALKA NKLQDTALSL VMLPLDGPGT
PTVFNADVSV NPASTMKLVT TYAALELLGP TFQWKTEFYT DGTLSNGVLN GNLYLKGGGD
PKLNMEKLWL LMRDLRANGV RTVTGDLVLD RSHFVQPNLP QFNDDGGDEN KPFLVKPDSL
LVNLKALRFV ARNDGGKVTI AVEPPIASIR IDNQVKAVAS KQCTGDVRYN PVPQADGISV
TVSGQLGDGC NSQTYLSLLD HPTYAAGAVR AIWNELGGSI QGGDRIENVP KSARLLARAF
SPDLVEVIRD INKYSNNTMA QQLFLSLGAQ FRTDADGDDA RAAQRVVRQW LAKKGITAPH
LVMENGSGLS RAERVSTREM AAMLQAAWKS PYAAEFMSSM PLVGMDGTMR KRLKRTAMTG
EGHIKTGTLN TVRAIAGFSR DSNGHTWAVA AILNDPKPWG ASQVLDQVLL DLYRQPKLAG
STAAN
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