| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_1351 |
|---|
| Symbol | |
|---|
| ID | 5869115 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | + |
|---|
| Start bp | 1506809 |
|---|
| End bp | 1508641 |
|---|
| Gene Length | 1833 bp |
|---|
| Protein Length | 610 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 641546454 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_001667594 |
|---|
| Protein GI | 167032363 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1132] ABC-type multidrug transport system, ATPase and permease components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.283519 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 38 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCTTGATG TGCCTGGGTC ACCCGACCCG GTGCCGGGCA AGCCATACAG TGCGGCCGAT
CGACTGAGCT GGGCGGAAAT CCGCCGCCTG GCCCTGCATC ACAAGAAAAA CCTCTGGTCT
GCCAACCTCA TCGCTGTGCT GGCGGCATGC TGCAGTGTGC CCATTCCGCT GCTGCTGCCG
TTGCTGGTGG ATGAGGTGCT GCTCGGCCAT GGTGATGCCG CGTTGAAGTG GATGAACCAC
CTGCTGCCGT CCAGCTGGCA GGTGGCCGCC GGCTACATTG GCCTGATGCT GGCACTCACC
CTGTGCCTGC GCCTGGCTGC GCTGGCGTTC AACGTGATTC AGGCCAAGCT GTTCGCCGGC
TTGGCCAAGG ATATCGTCTA CCGCCTGCGC ATTCGCCTGA TCGAGCGGCT CAAGCGTATT
TCGCTGAAGG AATACGAAAG CCTGGGCAGC GGCACGGTGA CCACCCACCT GGTCACCGAC
CTGGACACCC TCGACAAGTT CGTCGGCGAA ACCCTCAGCC GCTTCCTGGT GGCCATGCTG
ACCCTGACCG GCACGGCAGC CATCCTGATC TGGATGCACT GGCAACTGGC CTTGCTGATC
TTGCTGTTCA ACCCGCTGGT GATCTACTTC ACCGTGCAGT TGGGCAAGCG GGTAAAACAC
CTGAAAAAGC TCGAAAACGA CAGCACCGCA CGCTTTACCC AGGCACTGGC GGAAACCCTC
GATGCCATCC AGGAAATCCG CGCGGGCAAC CGCCAGGGCT ATTTCCTTGG CCGGTTGGGC
TTGCGTGCCC GTGAGGTGCG CGACTACGCC GTGGACTCTC AATGGAAAAG CGACGCCAGT
GGCCGTGCCA GTGGCCTGCT GTTCCAGTTC GGCATCGACA TCTTCCGCGC CGCGGCGATG
CTTACCGTGT TGTTTTCAGA CTTGTCGATC GGCCAGATGC TGGCGGTGTT CAGCTACCTG
TGGTTCATGA TCGGCCCGGT GGAGCAACTG CTCAACCTGC AATATGCCTA TTACGCCGCC
GGTGGTGCGC TGAGCCGCCT CAACGAGCTA CTGGCGCGTG ACGACGAGCC GCAGTACCCC
GCCGCCAGCG ACCCGTTCGC CGGTCGCCAG ACCGTGGGTA TCGAAGTGCG CGACCTGCGC
TTTGCCTATG CCGACGAGCC GGTGCTGGAG CATCTCGACC TGTCGATTGC CCCAGGCGAG
AAGGTGGCGA TTGTCGGTGC CAGCGGCGGC GGCAAGAGCA CCCTGGTGCA ACTGCTGTTG
GGCCTTTACA GCGCCCAGGC CGGAACCATC CGCTTCGGCG GGGCCAGCTT GCAGGAAATC
GGCCTTGAAA CCCTGCGCGA GAACGTCGCG GTGGTGTTGC AGCACCCGTC ACTGTTCAAC
GACAGCGTGC GTGCCAACCT GACCATGGGC CGTGATTGCA GTGACGATGC CTGCTGGCAG
GCGCTGCACA TTGCTCAACT GGATGCCACC ATCGCTGCCT TGCCCCAGGG CCTGGACAGT
GTGCTGGGGC GTTCTGGGGT GCGCTTGTCT GGCGGCCAGC GGCAGCGCCT GGCGATTGCC
CGCATGGTGC TGGCCGAGCC CAAGGTGGTT ATCCTCGACG AGGCCACATC GGCCCTGGAT
GCCGCCACCG AGTACAACCT GCATCAGGCC CTGGCGCGCT TCCTCAGCGG CCGCACCACG
CTGATCATCG CCCACCGGCT TTCGGCGGTG AAGCAGGCTG ATCGAGTACT GGTGTTCGAT
AGTGGGCATG TGGCTGAAGA TGGCGACCAC CAGCAGCTGA TTGCCGAAGG CGGGTTGTAT
GCCAAGCTGT ATGGGCACCT GCAGCAGAGC TGA
|
|---|
| Protein sequence | MLDVPGSPDP VPGKPYSAAD RLSWAEIRRL ALHHKKNLWS ANLIAVLAAC CSVPIPLLLP
LLVDEVLLGH GDAALKWMNH LLPSSWQVAA GYIGLMLALT LCLRLAALAF NVIQAKLFAG
LAKDIVYRLR IRLIERLKRI SLKEYESLGS GTVTTHLVTD LDTLDKFVGE TLSRFLVAML
TLTGTAAILI WMHWQLALLI LLFNPLVIYF TVQLGKRVKH LKKLENDSTA RFTQALAETL
DAIQEIRAGN RQGYFLGRLG LRAREVRDYA VDSQWKSDAS GRASGLLFQF GIDIFRAAAM
LTVLFSDLSI GQMLAVFSYL WFMIGPVEQL LNLQYAYYAA GGALSRLNEL LARDDEPQYP
AASDPFAGRQ TVGIEVRDLR FAYADEPVLE HLDLSIAPGE KVAIVGASGG GKSTLVQLLL
GLYSAQAGTI RFGGASLQEI GLETLRENVA VVLQHPSLFN DSVRANLTMG RDCSDDACWQ
ALHIAQLDAT IAALPQGLDS VLGRSGVRLS GGQRQRLAIA RMVLAEPKVV ILDEATSALD
AATEYNLHQA LARFLSGRTT LIIAHRLSAV KQADRVLVFD SGHVAEDGDH QQLIAEGGLY
AKLYGHLQQS
|
|---|
| |