| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_1087 |
|---|
| Symbol | |
|---|
| ID | 5868846 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | - |
|---|
| Start bp | 1234506 |
|---|
| End bp | 1235951 |
|---|
| Gene Length | 1446 bp |
|---|
| Protein Length | 481 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 641546186 |
|---|
| Product | gamma-aminobutyraldehyde dehydrogenase |
|---|
| Protein accession | YP_001667331 |
|---|
| Protein GI | 167032100 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1012] NAD-dependent aldehyde dehydrogenases |
|---|
| TIGRFAM ID | [TIGR03374] 1-pyrroline dehydrogenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 32 |
|---|
| Fosmid unclonability p-value | 0.413217 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCCTGG AGGAGTCCCC GATGCAAACG CAGATGCTGA TCAATGGCCA ACTGGTCGCG
GGCCAAGGCC CCGCCTGGAC CGTGCTCGAC CCGGCGCAGG GCACCGCCCT GGCGCAGATC
AACGAAGCCA CCGAGGCCCA GGTGGACAGC GCCGTGCGCG CTGCCGACCT GGCCTTCGAC
AGCTGGTCGC AAACCAGCCC CAAAGAGCGC TCGCAGGCCT TGCTGGCGCT GGCGGACGCC
ATCGAAGCCC ACGGCGATGA ACTGGCCCGG CTGGAATCTC AGAACTGCGG CAAGCCCCTG
AGCGCCGCGC TGAACGACGA AATCCCGGCG ATTGCCGATG TGTTCCGCTA CTTCGCCGGT
GCGGCGCGTT GCCTGGGCGG CTTGGCGGCC GGCGAATACC TGCCAGGCCA CACCTCGATG
ATCCGCCGCG ACCCGCTGGG CGTGGTGGCC TCGATTGCCC CGTGGAACTA CCCATTGATG
ATGCTGGCCT GGAAGATCGC CCCGGCCCTG GCAGCCGGCA ATACCGTGGT GATCAAACCC
TCCGAAATGA CCCCGCTGAC GGCCCTGCGC CTGGGCGAGC TGGCCCAGGA CCTGCTGCCA
CCGGGTGTAC TGAACATTCT GTTTGGCCGC GGCCAGACCG TCGGCAACCC GCTGGTCAAC
CATCCAAAGG TGCGCATGGT GTCGCTGACC GGCTCGATCC CCACGGGTGC ACACATCATC
AGTGCCACCG CCGACAGTGT GAAGCGCATG CACATGGAGC TGGGCGGCAA GGCCCCTGTA
CTGGTGTTCG ACGACGCCGA CATCGACGCC GCCATCGATG GCATCCGCAC CTTCGGCTTC
TACAACGCCG GCCAGGACTG CACCGCTGCC TGCCGCCTGT ATGTGCAGGA CGGCATCTAC
GAACGCTTCG TCGAGCGCCT GGGTGAAGCC GTCGCCAGCC TCAAGCCCGG CCTGCAGGAG
GCCGAGGACA CCGAGCTGGG GCCGCTGATC AGTGCCCAGC ACCGCGACAA GGTCGCAGGC
TTGGTGCAGC GGGCCATCGC CCAGCCGCAC ATTCGCCTGG TAACCGGTGG CAAAGCGATT
GACGGCAATG GCTTCTTCTT CGAGCCGACC GTGCTGGCCG ATGCCCTGCA GGACGACGAG
ATCGTGCGCA ACGAAGTGTT TGGCCCGGTG GTGTCGGTCA CCCGTTTTAC CGACGAAGCG
CAGGCGCTTG AGTGGGCCAA CGATTCCAAC TACGGCCTGG CCTCATCGGT ATGGACCCGC
GACACAGGCC GCGCCCACCG CCTGGCGGCG CGCTTGCAGT ACGGCTGCAC TTGGGTGAAT
ACCCACTTCA TGCTGGTCAG TGAAATGCCC CATGGCGGGC AGAAGCACTC AGGGTATGGG
AAGGACATGT CGATGTATGG ACTTGAGGAT TACACCTGCG TGCGGCATGT GATGATCAAG
CACTAG
|
|---|
| Protein sequence | MTLEESPMQT QMLINGQLVA GQGPAWTVLD PAQGTALAQI NEATEAQVDS AVRAADLAFD
SWSQTSPKER SQALLALADA IEAHGDELAR LESQNCGKPL SAALNDEIPA IADVFRYFAG
AARCLGGLAA GEYLPGHTSM IRRDPLGVVA SIAPWNYPLM MLAWKIAPAL AAGNTVVIKP
SEMTPLTALR LGELAQDLLP PGVLNILFGR GQTVGNPLVN HPKVRMVSLT GSIPTGAHII
SATADSVKRM HMELGGKAPV LVFDDADIDA AIDGIRTFGF YNAGQDCTAA CRLYVQDGIY
ERFVERLGEA VASLKPGLQE AEDTELGPLI SAQHRDKVAG LVQRAIAQPH IRLVTGGKAI
DGNGFFFEPT VLADALQDDE IVRNEVFGPV VSVTRFTDEA QALEWANDSN YGLASSVWTR
DTGRAHRLAA RLQYGCTWVN THFMLVSEMP HGGQKHSGYG KDMSMYGLED YTCVRHVMIK
H
|
|---|
| |