| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_0896 |
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| Symbol | ispG |
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| ID | 5868656 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | + |
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| Start bp | 1025795 |
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| End bp | 1026904 |
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| Gene Length | 1110 bp |
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| Protein Length | 369 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 641545997 |
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| Product | 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase |
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| Protein accession | YP_001667142 |
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| Protein GI | 167031911 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG0821] Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis |
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| TIGRFAM ID | [TIGR00612] 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 0.442348 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.00000013242 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCACGGCG AATCTCCGAT CAAACGTCGC GAATCCCGCA AAATTTGGGT CGGCAATGTG
CCGGTGGGTG GTGACGCACC CATCGCGGTG CAGAGCATGA CCAACACCGA TACCAACGAT
GTAGCCGCCA CCGTGGCGCA AATCCAGCGC CTGGTCGATG CCGGCGTGGA CATCGTACGT
GTCTCGGTAC CGGACATGGA CGCCGCCGAA GCCTTCGGCA AGATCAAGCA GCTGGTCAGC
GTGCCGCTGG TCGCCGACAT CCATTTCGAC TACAAGATCG CTCTGCGCGT TGCTGAGCTG
GGCGTCGATT GCCTGCGTAT CAACCCAGGC AACATCGGCC GTGAAGACCG TGTGCGCGCC
GTGGTCGACG CCGCCCGCGA CCGTGGTATC CCGATCCGTA TCGGGGTCAA CGCCGGTTCC
CTGGAAAAAG ACCTGCAGAA GAAGTACGGC GAGCCAACCC CGGCAGCGCT GGTCGAGTCG
GCCCTGCGCC ACGTCGAGCA CCTCGACCGC CTGGACTTCC AGGACTTCAA GGTCAGCGTC
AAGGCCTCCG ACGTGTTCAT GGCCGTCGAA GCCTACCGGC TGCTGGCCAA GCAGATCGTG
CAGCCGTTGC ACTTGGGCAT CACCGAAGCC GGTGGCCTGC GTTCGGGGAC GGTGAAATCT
GCCGTCGGCC TCGGTATGCT GCTGGCCGAA GGCATTGGCG ATACCATCCG TATCTCGCTG
GCGGCCGACC CGGTCGAAGA AGTGAAAGTC GGCTACGACA TCCTCAAGTC GCTGCACCTG
CGTTCGCGTG GCATCAACTT CATCGCCTGC CCGAGCTGCT CGCGGCAAAA CTTCGATGTG
GTCAAGACCA TGAACGAGCT GGAAGGGCGC CTGGAAGACT TGCTGGTGCC GCTGGACGTG
GCGGTGATCG GTTGCGTGGT CAACGGCCCA GGTGAAGCCA AGGAAGCCCA TGTAGGCTTG
ACCGGCGGCA CGCCGAACCT GATCTACATC GACGGCAAGC CTGCGCAGAA ACTGACCAAT
GACAACCTGG TCGATGAGCT GGAAAAACTC ATCCGCCAGA AAGCGGCCGA AAAGGTCGAG
GCCGACGCGG CGCTGATCGT CCGTGGCTGA
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| Protein sequence | MHGESPIKRR ESRKIWVGNV PVGGDAPIAV QSMTNTDTND VAATVAQIQR LVDAGVDIVR
VSVPDMDAAE AFGKIKQLVS VPLVADIHFD YKIALRVAEL GVDCLRINPG NIGREDRVRA
VVDAARDRGI PIRIGVNAGS LEKDLQKKYG EPTPAALVES ALRHVEHLDR LDFQDFKVSV
KASDVFMAVE AYRLLAKQIV QPLHLGITEA GGLRSGTVKS AVGLGMLLAE GIGDTIRISL
AADPVEEVKV GYDILKSLHL RSRGINFIAC PSCSRQNFDV VKTMNELEGR LEDLLVPLDV
AVIGCVVNGP GEAKEAHVGL TGGTPNLIYI DGKPAQKLTN DNLVDELEKL IRQKAAEKVE
ADAALIVRG
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