| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_0184 |
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| Symbol | |
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| ID | 5867881 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | - |
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| Start bp | 202476 |
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| End bp | 203852 |
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| Gene Length | 1377 bp |
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| Protein Length | 458 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 641545265 |
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| Product | HlyD family type I secretion membrane fusion protein |
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| Protein accession | YP_001666435 |
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| Protein GI | 167031204 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | [TIGR01843] type I secretion membrane fusion protein, HlyD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 34 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 0.326203 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGTTGCATA AGCTGGATAT GGGGCAGTTC AAGGACGGCC TGCGGCGCTA TTTCAAAGGC
AGTGACTCGC TTGGCGGCCA GCCGCTGCCG GAGGTCAACA AGGCCCTTAT CGAGGATGCG
CCGCGGGTGG TGCGGCTGAC CATTTGGGGC GTGATCCTGT TCTTCGTGTT CTTGATCGTG
TGGGCCAGCG TTGCGCCCAT CGACGAAGTC ACACGGGGTG AAGGCAAGGC CATTCCGTCG
TCCAAGGTGC AGAAGATCCA GAACCTGGAG GGCGGCATCG TCGCTGAAAT TTTCGCAAAG
GAAGGGGAGA TCGTCGAAGT CGGCCAGCCA TTGCTACGCC TGGATGAAAC CCGCTTCGCC
TCCAACGTGG GTGAAACCGA GGCCGACCGC CTGGCCATGG CCCTGCGGGT CGAACGCTTG
AGCGCCGAGG TCCAGGACAG CCCGCTGAAG ATCGACGAAG AACTGCGCAA AGCCGCGCCA
AGCCAGGCGG CCAGTGAAGA GTCGCTGTAC CAGAGCCGGC GCCAGCAACT GCAGGATGAA
ATTGGCGGCC TGCAGCAGCA GCTGGTCCAA CGCCAGCAGG AACTGCGCGA ATACAGCTCC
AAGCGCGCCC AGTACGCTAA CAGCCTTGAG CTGCTGCGCA AGGAAATCGG CATGTCCGAA
CCGCTGGTGG CGACCGGCGC GATTTCCCAG GTTGAGGTGC TGCGCCTGCG CCGTGCTGAA
GTGGAAAACC GCGGTCAGCT GGACTCCACC GCACTGGCCA TCCCGCGTGC CGAGGCTGCC
ATCCGCGAGG TGCAAAGCAA GATCGAAGAG ACCCGTGGCA AGTTCCGCAG CGAAGCGCTA
ACCCAGCTGA ACGAAGCGCG CACCGAACTG AACAAGGCCA CCGCCACCAG CAAAGCGCTG
GACGACCGGG TTCACCGCAC CATGGTCACT TCGCCGGTGC GCGGTATCGT CAAGCAACTG
CTGGTGAACA CCATTGGCGG TGTAATCCAG CCTGGCAGCG ATATCATCGA GATCGTGCCA
CTGGACGACA CGCTGGTCAT CGAGGCGAAG ATCCTGCCCA AAGACATCGC CTTCCTGCAC
CCTGGCCAGG AAGCGACAGT CAAGTTCACG GCGTATGACT ACACCATCTA CGGTGGGCTG
AAGGCCAAGC TTGAGCAGAT CGGCGCCGAC ACCATCACCG ATGAAGACAA GAAGACCACT
TACTACCTGA TCAAGCTGCG CACCGATCGC AGCCACCTGG GGACGGACGA GAAGCCGCTG
CTGATCATTC CGGGGATGGT GGCGACGGTG GACATCATGA CCGGCAAGAA GACCATCATG
AGCTACCTGC TCAAGCCGAT CATGAAGGCG CGTTCGGAAG CGCTGCGCGA GCGCTAG
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| Protein sequence | MLHKLDMGQF KDGLRRYFKG SDSLGGQPLP EVNKALIEDA PRVVRLTIWG VILFFVFLIV
WASVAPIDEV TRGEGKAIPS SKVQKIQNLE GGIVAEIFAK EGEIVEVGQP LLRLDETRFA
SNVGETEADR LAMALRVERL SAEVQDSPLK IDEELRKAAP SQAASEESLY QSRRQQLQDE
IGGLQQQLVQ RQQELREYSS KRAQYANSLE LLRKEIGMSE PLVATGAISQ VEVLRLRRAE
VENRGQLDST ALAIPRAEAA IREVQSKIEE TRGKFRSEAL TQLNEARTEL NKATATSKAL
DDRVHRTMVT SPVRGIVKQL LVNTIGGVIQ PGSDIIEIVP LDDTLVIEAK ILPKDIAFLH
PGQEATVKFT AYDYTIYGGL KAKLEQIGAD TITDEDKKTT YYLIKLRTDR SHLGTDEKPL
LIIPGMVATV DIMTGKKTIM SYLLKPIMKA RSEALRER
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