| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ppro_1172 |
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| Symbol | |
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| ID | 4571521 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pelobacter propionicus DSM 2379 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008609 |
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| Strand | - |
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| Start bp | 1224272 |
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| End bp | 1226605 |
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| Gene Length | 2334 bp |
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| Protein Length | 777 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 639755209 |
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| Product | ribonuclease R |
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| Protein accession | YP_900852 |
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| Protein GI | 118579602 |
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| COG category | [K] Transcription |
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| COG ID | [COG0557] Exoribonuclease R |
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| TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases
[TIGR02063] ribonuclease R |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.000369652 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAGATTT CCAAGAAAAA CATACTCGCC TTTCTCAAGC AGCAGGACGG AGCCATCCAC
TTCGCCGGAA TCCTGCGCCA GTTCGGCGGT CGCCACGTAA AGAACGAACT GAAACGCATG
CTGGATGACA TGGCCCAAGA CGGCGAACTG GTCAGATTCA GGGGCAACAG CTATGCCCTG
GCAAGCGCGG CAACCAGCAT CCGCGGAAAG CTCTCCAGCC ACCGGGACGG CTACGGCTTC
GTCACCCCCC AGGGGGGGGG CGAGGACATT TTCATCCCCC AGCGCCACAT GAGGGGCGCC
ATGCATGGCG ACACCGTGGA GGTGCATGCA GAACGAAGCC GCATGGGGGG GGGCAAGTTC
GAAGGGCGCA TCACCAGCGT AGTGGAGCGG GGGGTGAGCC GCGTGGTGGG GCGCTACGAG
GAGACCAGGC GCGGCGCCAT CGTCATCCCC GAAGAGACCC GCCTCAACCT GGTCATCGCC
ATCCCGCCCA AGGGACGCGG CCTGGCCCAG GACGGCCAGC AGGTGGTGGT GGAGCTCTCC
TCCTACCCCG TGGGCGGCCG GCCGGCAGAG GGAAATGTGG TGGAGGTGCT GGGCTGGCCC
GACGACCCCG AGGTGGAGGT GCAGTCGGCC ATCCGACGCT TCGACCTGCC GCACGTCTTC
GCCCCCGACA CCCTGGCAGA GGCCGAGGCG ATCCCCGAAA CCGTGCCGGC ACAAGAGCTG
GCCGGGCGGG TGGATCTGCG TCCACTGGCC ACCGTGACCA TCGACGGCGA GACGGCCCGC
GATTTCGACG ACGCCGTCTC CCTGCGACGT GAGGGGGACA ATTTCCGGCT GTGGGTTTCC
ATCGCCGACG TGTCCCATTA CGTCAGGCCG GACAGCCCCC TGGACCGCGA CGCCTACCTG
CGCGGCACAT CGGTCTACTT CCCCGACCGC TGCATCCCCA TGCTGCCGGA GCGGCTCTCC
AACGGCATCT GTTCCCTCAA CCCGGGGGTG GAGCGCCTGA CCATGACCGC CGAGATGCTC
TTCGACAGGG ATGGCAGCAT GCTGGAATCG TCCTTCTACC CCGGCATCAT CGCAAGCGCG
GCCCGGCTGA CCTACACCCA GGTGAAGCGG GTCATCGTGG ACCAAGACCG GGAGACGGCC
GACAGCCTGG GGACGGTGAC GCCCATGCTG CTGGAGATGA AGGAGCTGGC ACTGATCCTG
ATGGGGATGC GCCGCAAACG GGGGAGCATC GACTTCGACC TGCCCGAATC GGAGGTCATC
ATCGGCCTGA CCGGCCTGAC CGAGGGGATC GTGCGCGCGG AGCGCACCCT GGCCCACCAG
CTGATCGAGG AGTTCATGCT GGCGGCCAAC GAGGCGGTGG CCCTGTTCAT TGCGGAAAAG
GGCATCCCCC TGCTCTACCG CATCCACGAG AACCCGGACC CGGCCAAGCT GATCAACTTC
CAGGAGTTCG CCTTCGGCTT CGGCTACGAG TTCCCCCTGA AGGAGGAGCG GGTCAATCCG
GCCGACCTGC AACGCCTTTT GGAGAGTGCA GCAGGACGTC CCGAGGAGCG GATGATCAAC
TACGCCCTCT TGCGTTGCAT GAAGCAGGCC CGCTATGCGG CCGAGAACCT GCACCACTTC
GGACTGGCCT CCCGCTGCTA CTGCCACTTC ACCTCCCCCA TCCGCCGCTA CCCCGACCTG
GTGGTGCACC GCATCCTTAA AGCGCTCCTG GCCCTGGCCG AAAACAGGGG GAGCAAACAG
GCCGAGAAGC GGCTCTCCCT GGCGACCCAC AACCTGTCCG AGGTCGGCGA GCACACCAGT
AAGCGCGAAC GGGTGGCCAT GGAGGCGGAA CGGGACATCG TGGAACTGAA GAAGGCGCAG
TTCATGCAAC AGCACCTGGG TGAGGAATTC GACGGATTCA TCACCGGCGT GACCGGCTTC
GGCTTTTTCG TGGAACTGGA GGAACTGTTC GTGGAGGGGT TGGTGCACGT CTCCACCCTG
GACGACGACC TCTACACCTT CGTGGAAAAC CGCCATTCCC TGGTCGGCCG CAACCGGGGG
CGGGTGCTGC GCATCGGGGA CAGGGCGCGG GTGCGGGTGG CATCGGTCTC CCCGGCAACA
AGGAGGATCG AGTTCGTGCT CGTGGGGCAC GCATCATCCA CGCCCCAGAT GCCACTCACG
ACCGCAGGGG ACGGGGAATT CCCACGCACC CCCATCAGGG GCAAGCGCCT GCCGGGGCAG
GGCCGCGAAA GGAACGCCGA GGGAACGAAA CCCTCCCCAG CGGCCGGCAG GCGTGAGGGG
CAAAAGCGGA CGAAAAAGGG GGCCGTCCGC ACGGGGGGCA GGAAACGGCG CTGA
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| Protein sequence | MQISKKNILA FLKQQDGAIH FAGILRQFGG RHVKNELKRM LDDMAQDGEL VRFRGNSYAL
ASAATSIRGK LSSHRDGYGF VTPQGGGEDI FIPQRHMRGA MHGDTVEVHA ERSRMGGGKF
EGRITSVVER GVSRVVGRYE ETRRGAIVIP EETRLNLVIA IPPKGRGLAQ DGQQVVVELS
SYPVGGRPAE GNVVEVLGWP DDPEVEVQSA IRRFDLPHVF APDTLAEAEA IPETVPAQEL
AGRVDLRPLA TVTIDGETAR DFDDAVSLRR EGDNFRLWVS IADVSHYVRP DSPLDRDAYL
RGTSVYFPDR CIPMLPERLS NGICSLNPGV ERLTMTAEML FDRDGSMLES SFYPGIIASA
ARLTYTQVKR VIVDQDRETA DSLGTVTPML LEMKELALIL MGMRRKRGSI DFDLPESEVI
IGLTGLTEGI VRAERTLAHQ LIEEFMLAAN EAVALFIAEK GIPLLYRIHE NPDPAKLINF
QEFAFGFGYE FPLKEERVNP ADLQRLLESA AGRPEERMIN YALLRCMKQA RYAAENLHHF
GLASRCYCHF TSPIRRYPDL VVHRILKALL ALAENRGSKQ AEKRLSLATH NLSEVGEHTS
KRERVAMEAE RDIVELKKAQ FMQQHLGEEF DGFITGVTGF GFFVELEELF VEGLVHVSTL
DDDLYTFVEN RHSLVGRNRG RVLRIGDRAR VRVASVSPAT RRIEFVLVGH ASSTPQMPLT
TAGDGEFPRT PIRGKRLPGQ GRERNAEGTK PSPAAGRREG QKRTKKGAVR TGGRKRR
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