| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ppro_0931 |
|---|
| Symbol | |
|---|
| ID | 4574586 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pelobacter propionicus DSM 2379 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008609 |
|---|
| Strand | + |
|---|
| Start bp | 980635 |
|---|
| End bp | 982338 |
|---|
| Gene Length | 1704 bp |
|---|
| Protein Length | 567 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 639754973 |
|---|
| Product | pyridoxal-dependent decarboxylase |
|---|
| Protein accession | YP_900618 |
|---|
| Protein GI | 118579368 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0076] Glutamate decarboxylase and related PLP-dependent proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCGAAAA AACGTGACGC AGCCCGCGCC AACCTGGAAA CCCTGTACCG GATCTTCACC
GTACCCGAGG CGCCCGATTC GACCCTGGGC GCCATCGACC AGGCGATTGC CGACGATGTA
ATCGGTTTTT TGCAGACCCA TATCGTTGCC GTGGAGCACG ACCTGGAAGA GATCGAGGCC
TACTACTCCT CCCCTGTCAT CCCGGAAGAG CCGACCTATG TCTCCGAATA TACGGAATTC
GTCAAACGGA ACCTGGTGGC CCAGTCGGTG CATACCGCCG CCCCCGGCTT TGTGGGCCAC
ATGACCTCGG CGCTCCCCTA CTTCATGCTT CCCCTGGCGC GGCTGATGAC CGCCCTCAAC
CAGAACCTGG TCAAGGTGGA GACCTCCAAG GCCTTTACCC CCATGGAACG GCAGGTTCTG
GCCATGCTCC ACCGCCTGGT CTATCGCCGG CCGGACGACT TCTATCCCCC CTGGATTCAC
AACAGCCAGC ATGCCTTGGG CGCTTTCTGT TCCGGCGGCA CCATTGCCAA CGTTACGGCG
CTCTGGGTGG CGCGCAACCG CCTCTTCGCC CCCAGCAGGA CCTTTGGCGG CATTGCCCGG
GAAGGGCTGT TCCGCGCCCT GAAACATCAC GGCTGCGACG GGATCGCCGT GCTCGTCTCC
GAGCGGGGAC ACTACTCCTT CGGCAAGGCC ACCGACCTGC TGGGCTTCGG CCGGGACAAC
CTGATCAAGG TGAAGACCGA CGGCCATAAC CGCATCGACC TGAAGCTGCT CAGGGAAGAG
TACCGGCGTC TGCGGGACCG CAACATCCTT CCGCTGGCGC TGGTGGGCAT TGCCGGGACC
ACCGAAACCG GCAACGTGGA CCCGCTGGAG GCCATGGCGG ATTTCGCCCA GGAGATCGGC
TGTCATTTTC ACGTGGATGC CGCCTGGGGC GGACCGACCC TCTTTTCCGA CCGTTACCGC
TCCCTGCTGG CCGGCATAGA GCGGGCCGAT TCGGTGACCA TCGACGGCCA CAAGCAGCTG
TATGTGCCCA TGGGGGCGGG GATGGTGGTG TTCAAGGACC CGACTGCCCA GTCGGCCATA
GAGCACCACG CCAACTACAT CCTGCGCCGC GGTTCCAAGG ACCTGGGCAG CCACACCCTG
GAGGGGTCGC GGCCCGGGAT GGCCATGCTG GTTCATGCCG GTTTTTGCAT CATCGGTCGC
AAGGGGTACG AGCTGCTCAT CGACAGGGGG ATCGAGCGGG CGCGGACCTT TGCCGAGATG
GTCCGCAGCC ATCCCGATTT CGAGCTGACC AGCGAGCCGG AGCTGAACAT CCTTACCTAC
CGCTTCAGTC CGGCCAAGGT TCAGCAGGCC CTGGCGCGAG CAACGGATGA ACAGCGCCCC
TACATCAACG CGCTCCTGGA CCAGGTTAAC CAGCAGCTGC AGAAGCACCA GCGGGAAGCG
GGCAAGACCT TCGTCTCCCG AACCCGTCTC TGCGTGGGGC CTCGCCAGGA GGAGTTCACC
GTGCTGCGGG CCGTGCTGGC CAACCCGCTG ACCACCGATG AGATCATGGA GGCGATTCTG
GCCGAACAGT GCGAGATCGC GCGCACGCCT GAGATTCAGG CGCTGCTCAG GCAGATAGAG
CGGCGCTGTG CAGGTGGGGA GCGGGACGAG CCGCTCCAAC TCCAGGACTA CCCCGGTGAG
TTGGACGAGC TGGACGAGTC GTAG
|
|---|
| Protein sequence | MPKKRDAARA NLETLYRIFT VPEAPDSTLG AIDQAIADDV IGFLQTHIVA VEHDLEEIEA
YYSSPVIPEE PTYVSEYTEF VKRNLVAQSV HTAAPGFVGH MTSALPYFML PLARLMTALN
QNLVKVETSK AFTPMERQVL AMLHRLVYRR PDDFYPPWIH NSQHALGAFC SGGTIANVTA
LWVARNRLFA PSRTFGGIAR EGLFRALKHH GCDGIAVLVS ERGHYSFGKA TDLLGFGRDN
LIKVKTDGHN RIDLKLLREE YRRLRDRNIL PLALVGIAGT TETGNVDPLE AMADFAQEIG
CHFHVDAAWG GPTLFSDRYR SLLAGIERAD SVTIDGHKQL YVPMGAGMVV FKDPTAQSAI
EHHANYILRR GSKDLGSHTL EGSRPGMAML VHAGFCIIGR KGYELLIDRG IERARTFAEM
VRSHPDFELT SEPELNILTY RFSPAKVQQA LARATDEQRP YINALLDQVN QQLQKHQREA
GKTFVSRTRL CVGPRQEEFT VLRAVLANPL TTDEIMEAIL AEQCEIARTP EIQALLRQIE
RRCAGGERDE PLQLQDYPGE LDELDES
|
|---|
| |