| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ppha_2852 |
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| Symbol | sdhA |
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| ID | 6461280 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pelodictyon phaeoclathratiforme BU-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011060 |
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| Strand | - |
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| Start bp | 2940920 |
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| End bp | 2942860 |
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| Gene Length | 1941 bp |
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| Protein Length | 646 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 642729000 |
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| Product | succinate dehydrogenase flavoprotein subunit |
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| Protein accession | YP_002019615 |
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| Protein GI | 194337821 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1053] Succinate dehydrogenase/fumarate reductase, flavoprotein subunit |
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| TIGRFAM ID | [TIGR01811] succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACACGCC TCAACGCCAG AATCCCTGAA GGGCCGGTGG CTGAAAAATG GACCGCCTAC
AAATCGGGCT GCAAGCTGGT AAACCCCAAC AACAAACGCA AACTTGATAT CATTGTCGTC
GGTACCGGTC TTGCCGGAGC CTCGGCTGCT GCATCGCTTG GGCAGCTTGG TTACAATGTC
AAGGTGTTCT GCTATCAGGA TACGCCGCGT CGTGCACACA GTATCGCTGC ACAGGGTGGA
ATCAATGCCG CTAAAAACTA TCCAAACGAT GGCGACAGCG CCTATCGACT CTTTTACGAC
ACCATCAAAG GTGGCGATTA TCGGGCTCGT GAAGCAAATG TCTATCGTCT GGCTGAAGTC
AGTAATCAGA TCATTGATCT CTGTGTGGCT CAGGGAGTGC CATTTGCCAG AGAGTATGGC
GGCTTGCTGA CCAACCGTTC ATTCGGTGGT GCACAGGTAT CGAGAACGTT CTATGCAAGG
GGCCAGACTG GCCAGCAGCT TTTAATTGGC GCTTACGGCG CCCTGAGTCG TCAGATTGCC
GCTGGCAATG TTACGCTTTT CAATCGTCGT GATGTTCTTG ATACGGTACT TGTGGATGGA
AAGGCTCGAG GGGTCATTGC CCGAAACCTG GTTACCGGCA AGATCGAACG CCATGCAGCT
CACGCTGTTG TGTTGGCAAG TGGTGGGTAC GGGAACGTTT TTTTCCTTTC GACCAATGCC
ATGGGTTCCA ATGTGACTCC TGCATGGAGC GCGTACAAAA AAGGGGCAAT GTTTGCCAAT
CCGGCCTTTA CCCAGATTCA CCCGACCTGT ATTCCGGTGC ATGGTGATGC GCAGTCCAAG
CTGACGTTGA TGAGCGAGAG CTTGCGCAAC GATGGCAGGA TATGGGTTCC CGCCAAGATA
AAGGATGTTG AAAGGCTCAG GAACAAAGAG ATCAAGGCCT CTGATATTCC AGAAGCCGAT
CGCGATTACT ATCTGGAGCG TCGCTATCCC GCTTTCGGCA ATCTCGTGCC GAGGGATGTG
GCTTCACGGG CTGCCAAGGA GCGTTGCGAT GCCGGTTTTG GCGTTGGTAC TACGGGGATG
GCCGTTTTTC TTGACTTTGC CGATGCGATC AAACGCAAGG GCCATGATGC GATTGACTCG
CTTTATGGCA ACCTCTTTCA GATGTACGAG CAGATTGTTG CGGAGAGCCC CTATGAAATG
CCGATGATGA TCTATCCGGC AGTGCACTAT ACCATGGGAG GTCTCTGGGT TGATTATGAA
TTGATGACGA CCATTCCAGG TCTTTATGCT ATTGGTGAAT GCAATTTTTC TGATCATGGA
GCAAACCGCC TCGGCGCTTC AGCGCTTATG CAGGGGCTTG CTGATGGTTA TTTCGTACTG
CCCTATACGA TCGGGAACTA TCTTGCTGCT GAAATTCATA CGCCACGCTT CGATACAGAC
TCTTCTGAAT TCAAGCTTGC TGCCGATGCC GTCAGTGATC GCCTGAAGCG GATCAAAAAC
AGTTCAGGCA AAGAGTCGGT CGATCATTTC CATCGTCGTC TTGGAAAAAT CATGTGGGAG
TATTGCGGTA TGGCACGAAA TGATGCAGGC CTTACCGAAG CCCTTTATCA GATTACCGAA
CTGCGTCACG AATTTGCACG CGGAGTGCGG ATTCCCGGAG GACTGGACGA ATATAATCCT
GAAATGGAGA AGGCGTGTCG GGTAGCTGAT TTTATCGAAC TTGGCCAGCT TATGGTGCGA
GATGCCCAGC AGCGCAAAGA GTCGTGCGGG GGACATTTCA GGGAGGAGTA TCAAACCAGT
GAGGGCGAAG CATTGCGCAA TGATGAGAAG TTCGCCTTTG TCGGTGCGTG GGAATACAAG
GGTCGTGATG CCTCAGCAGA ACTGCACCGT GAGGCACTTC AATTCAACGA GATCAAGCTC
TCCCAGCGGA GCTATAAATA A
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| Protein sequence | MTRLNARIPE GPVAEKWTAY KSGCKLVNPN NKRKLDIIVV GTGLAGASAA ASLGQLGYNV
KVFCYQDTPR RAHSIAAQGG INAAKNYPND GDSAYRLFYD TIKGGDYRAR EANVYRLAEV
SNQIIDLCVA QGVPFAREYG GLLTNRSFGG AQVSRTFYAR GQTGQQLLIG AYGALSRQIA
AGNVTLFNRR DVLDTVLVDG KARGVIARNL VTGKIERHAA HAVVLASGGY GNVFFLSTNA
MGSNVTPAWS AYKKGAMFAN PAFTQIHPTC IPVHGDAQSK LTLMSESLRN DGRIWVPAKI
KDVERLRNKE IKASDIPEAD RDYYLERRYP AFGNLVPRDV ASRAAKERCD AGFGVGTTGM
AVFLDFADAI KRKGHDAIDS LYGNLFQMYE QIVAESPYEM PMMIYPAVHY TMGGLWVDYE
LMTTIPGLYA IGECNFSDHG ANRLGASALM QGLADGYFVL PYTIGNYLAA EIHTPRFDTD
SSEFKLAADA VSDRLKRIKN SSGKESVDHF HRRLGKIMWE YCGMARNDAG LTEALYQITE
LRHEFARGVR IPGGLDEYNP EMEKACRVAD FIELGQLMVR DAQQRKESCG GHFREEYQTS
EGEALRNDEK FAFVGAWEYK GRDASAELHR EALQFNEIKL SQRSYK
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