| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ppha_2186 |
|---|
| Symbol | |
|---|
| ID | 6461553 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pelodictyon phaeoclathratiforme BU-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011060 |
|---|
| Strand | - |
|---|
| Start bp | 2268073 |
|---|
| End bp | 2271096 |
|---|
| Gene Length | 3024 bp |
|---|
| Protein Length | 1007 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 642728380 |
|---|
| Product | protein of unknown function DUF323 |
|---|
| Protein accession | YP_002019004 |
|---|
| Protein GI | 194337210 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG1262] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.000553602 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATAGAAA GAATGAGTGA TAAAAATATT CGGATCATAA AGGTACTTGT CGCATCACCC
TCTGATGTTG TTGCTGAGCG TGAAATGGCG GAAGATGTCA TAAAGAAATG GAATGCTCGG
CCACAGCGTC CGCTGATGCT CGAAGCGGTG TTATGGGAAT CACATGCAGC GCCTGAAACC
GGGGGGCGGG TGCAGGGGAT ACTCAATAAA CAGATTGTTG ATGAATGTGA TTTTGCTATC
GGTATTTTCT GGACACGCAT TGGCACAGGT ACTGGTGTTG CTCCAGGCGG GGCGGTTGAA
GAGGTTGAGA GAATGATGGC AGCCGGAAAA TTGGTCATGC TCTATTTCTC AAATGTGCCA
TACCGGAGGA AGGATGTTAC TATCGAACAG ATTGAGGCAC TTGATCGCTT CAGGGAATCA
CTACAATCGA ATGCGCTGAT AGAGGAGTAT GACGAGCGTC ATGAGTTCCG GGAAAAACTT
GCTCATCAGC TTGATATACA GGTTCACCGG TGGTTCTGTT CAAAAGAATG TGGTGATGAT
ACCTCAATGA AAAACAGGTA TCAACCACTT GATTTCAACA CAGATTCGCT TCTCCAGCTC
TACCACTCAA CGCTGACAGA GCAACTTGGC AATACCAACC TTTCGGGTTC TCCGGCAATC
GAGAGTTTTT CTGTAAGGCA TAAGGATACC TTTGTTTCGT TGAGTCTTTC TGATACATGG
CGCTGCGAAG CACGATCCCA TACTGAGGGC GATCTCTGTG AACCCAAAAA AGAAGAGCGC
GTTCGTGCCC CTGAAGAAGT GATGAGTTTT GTTTTTCAAA AGCATCACTT GCTACTGGTT
ATTGGCGATC CGGGTTCTGG TAAAACAACA TTGCTCAAAT ATTATGCACT TTCATGCCTT
GATAACGGTA GATGTCATGA ATTTGGTTTT AGTGAACCAG TCAATGTTTT TTACCTCCCG
TTGCGTGATA TCAACAAGAG TGATACCGGT TATCCCTCAT TGCCGGCAGC TCTTTCCGCA
TGGTCTGAAA AATATTTTCT CAAAATTAAA GAAAACCTTT TTGCGGGCTG GCTTGGTGAG
GACTCAACCC TTGTACTCCT TGATGGACTG GATGAAATCA GCAACGTCGA TGATCGGAAG
GCTGCTTGTG ACTGGATTGA CCGAACGGTT TCAAGGTTTA CAAATGCCCG ATTTGTGGTT
ACCTCCCGAA GCACAGGTTA CCGGAAGGGG GATGGCATCG AGCTTGAGGC AAGCCATCTG
CGGGCCGATA TCATGGACTT TACCAAGGAA AAACAGGCTG AGTTTTTGCA TCTTTGGTTT
AGTGCAGCAT TTTTTCGGGA GATACCTCTC AGTGCTCGGG ATGAACCGGA GTTGAGAGCT
CGGCAGGAAC AACAGGCCGC TCAAAAAGCG GCGCAAAAAG CTGACGCAGT TATTACGTTT
CTCGCGCAGG AAAAAAACAG GAGTATGCAC TCTCTGGCAG GTGTCCCCCT GCTCTTGCAG
ATTATGGCAA TGCTCTGGAA AGAGAGGGAG TTTCTGCCAG CAGGGCGTTC AGAACTCTAT
GATGCTGCAT TGAATTATAT GCTCGATTAT CGTGACCGTC GCAGGGGAAT CTATCCGCTG
CTTGCAGCCA AAGATGCTCG GCGAGTACTG AGCCCGGTTT CTCTCTGGAT GCAGGAAGAG
CTGAAAACAG ACGAAGCTGA CCGGATTGCA ATGCAGCAGA AAATGCAAAA GCTGCTCGAC
ACGCTCTACA ATTCTCTTCC CGCAGGGGAG TTCTGCAAAA ATCTTGTGGA CCGGGCCGGG
GTGCTGGTGG AGTATGGCGA CAAGGAGTAT GTTTTTCGGC ACAAATCATT CCGTGAGTAC
CTTGCGGGTG TTCAACTGCT CAAAAATATG TACCGGCCAG ACTATCTCGA CACCATTGTT
ACCAGGTTTG GAGACGATTG GTGGCAAGAA CCGCTTCGCT TTTTTATCGG CCATGTTGAA
AATGAAGAGC TTTTTGACAG CTTCATGCAG AAGCTTTTCG ATTCGCCGGT TACGGAAAAC
TTGACATCAA AGCAGCAGGA CTTGCTCGTC ACCCTTGTCG AAGAGGCTCC ACAGCGGAAG
ATCGATGCCT TGCAAAAGAA GTTGTTTGAC CTTCAGACCA CGCCAAACCG GCAGCGATAT
ATCATGGAGT GCCTGAAAAT CATTGGCAAG CCTGAAGCAC TTGCAATAGT GAAGACGTTT
ATCGAATCAG GAAGAAACAA TGTTTTATTT GACAAACTTC ATGCAGAGTA CATTCTGATA
AAAGGTGGCA CATTTGCTTT CTCGTTGACT GAGAAGCTTG AAAAGATGCC AGATCTTTAT
GTCGCTAAAT ATACGGTTAC CAACGAGTTG TACCGGCAGT TCCTCAATTA CCTACAGTCA
GGAAAGGTGC CCGATATTGA TGCTGTTACC CTGGAATTGT ACCACAACCA CTTACAGAAA
ATGGCGAACA GCATTAATGG ATTCAGCGAT TATCTTCAGG ATAAACGAGA TCTGGCAAAG
CTTTTCCGCT CTGAATCGGA TGACGACAAG CGATTTAACA AGGAGGAACA ACCGGTGATG
GATATAAGCT GGTATGCAGC CAAAGCCTAT TGCTTGTGGC TCTCTCTTCT GGAAAGCGAA
GGCAGGATTG CTAATATTTA TCGATTGCCC AAAGAAATCG AGTGGGAATA TGCTGCTGCC
GGGGAGGATG GACGTGAATA TCCGTGGGGA AATACAGCGC CTAATTCAAA ACTGGCAAAT
TTTAATCAAA ATGAGGGAGC CACAACACCG GTTGGGCGCT ATCCTGAAGG TGCAACTCCG
GAAGGGTTGT ACGATATGGC TGGCAATGTG TGGGAGTGGA CGGATGATAT ACACGAAAAA
TACGCTCTTG CCCGTGCGTT GCGCGGCGGT TCCTGGGGCT ATGTTCCCGG CGTTCTGCGT
TGCTCTGCCC GGTACTTCAG TCATCCGGCG AGCTGGCTCA GCGGTTTTGG CTTTCGGGTT
GTCCGTTCCA GTCCCTCTTC CTGA
|
|---|
| Protein sequence | MIERMSDKNI RIIKVLVASP SDVVAEREMA EDVIKKWNAR PQRPLMLEAV LWESHAAPET
GGRVQGILNK QIVDECDFAI GIFWTRIGTG TGVAPGGAVE EVERMMAAGK LVMLYFSNVP
YRRKDVTIEQ IEALDRFRES LQSNALIEEY DERHEFREKL AHQLDIQVHR WFCSKECGDD
TSMKNRYQPL DFNTDSLLQL YHSTLTEQLG NTNLSGSPAI ESFSVRHKDT FVSLSLSDTW
RCEARSHTEG DLCEPKKEER VRAPEEVMSF VFQKHHLLLV IGDPGSGKTT LLKYYALSCL
DNGRCHEFGF SEPVNVFYLP LRDINKSDTG YPSLPAALSA WSEKYFLKIK ENLFAGWLGE
DSTLVLLDGL DEISNVDDRK AACDWIDRTV SRFTNARFVV TSRSTGYRKG DGIELEASHL
RADIMDFTKE KQAEFLHLWF SAAFFREIPL SARDEPELRA RQEQQAAQKA AQKADAVITF
LAQEKNRSMH SLAGVPLLLQ IMAMLWKERE FLPAGRSELY DAALNYMLDY RDRRRGIYPL
LAAKDARRVL SPVSLWMQEE LKTDEADRIA MQQKMQKLLD TLYNSLPAGE FCKNLVDRAG
VLVEYGDKEY VFRHKSFREY LAGVQLLKNM YRPDYLDTIV TRFGDDWWQE PLRFFIGHVE
NEELFDSFMQ KLFDSPVTEN LTSKQQDLLV TLVEEAPQRK IDALQKKLFD LQTTPNRQRY
IMECLKIIGK PEALAIVKTF IESGRNNVLF DKLHAEYILI KGGTFAFSLT EKLEKMPDLY
VAKYTVTNEL YRQFLNYLQS GKVPDIDAVT LELYHNHLQK MANSINGFSD YLQDKRDLAK
LFRSESDDDK RFNKEEQPVM DISWYAAKAY CLWLSLLESE GRIANIYRLP KEIEWEYAAA
GEDGREYPWG NTAPNSKLAN FNQNEGATTP VGRYPEGATP EGLYDMAGNV WEWTDDIHEK
YALARALRGG SWGYVPGVLR CSARYFSHPA SWLSGFGFRV VRSSPSS
|
|---|
| |