| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ppha_2177 |
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| Symbol | |
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| ID | 6461665 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pelodictyon phaeoclathratiforme BU-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011060 |
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| Strand | + |
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| Start bp | 2262962 |
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| End bp | 2264572 |
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| Gene Length | 1611 bp |
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| Protein Length | 536 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 642728373 |
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| Product | putative alpha-isopropylmalate/homocitrate synthase family transferase |
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| Protein accession | YP_002018997 |
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| Protein GI | 194337203 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0119] Isopropylmalate/homocitrate/citramalate synthases |
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| TIGRFAM ID | [TIGR00977] 2-isopropylmalate synthase/homocitrate synthase family protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACTGTTA CCACAAAAAA AATAGAACTT TACGACACCA CCCTCCGTGA TGGCACACAG
GGTGAGCATA TCAACCTCTC GGTTCAGGAC AAGCTCCTTA TCGCACAGAA GCTTGACGAA
TTCGGCATGG ACTATATCGA AGGTGGATGG CCGAGCAGCA ACCCGAAAGA TGAAGAGTTT
TTCATCAAGG CACGGCAGCT TTCGTTCAAA CATGCCAGGC TCACCGCCTT CGGTTCAACA
GCCCGTTTTG TAAAAAGCGT TGAAAGCGAC CCCAACCTGC TCGGGCTGCT CCACTCCGAA
ACACCGGTGA TCACCATCTT CGGCAAAACA TGGCAGGCAC ACTCTGAAAA AAGTCTTGGT
ATTTCCGATG AAGAGAATGC CGAACTGATC TATCGCTCCG TTGCCTTTCT CAAGCAGCAG
GGACGAGAGG TCTTTTTTGA TGCCGAACAC TTTTTCGATG GCTACAAAAA CAACCCGGAA
TTTGCCCTGA AAATGCTCCT TTCAGCCGTT GAGGGTGGAG CGTCAAGAAT TGTACTTTGC
GACACCAACG GAGGTTCACT GCCCCATGAG GTGACCGATA TCGTATCCCG TGTTCTGGCC
GTCACCGGTG TTCCTGTGGG TATTCACAGC CACAATGATG GTGATCTCGC CGTAGCAAAC
TCCATCGCCT CCGTCATGGC TGGAGCAACC CATATCCAGG GAACCATCAA CGGCATCGGC
GAACGGTGCG GCAACGCCAA CCTCATCAGC ATTATTCCCA ACGTCATGCT GAAGCTGCAA
CGCTCATTCA CCTTTGTCGA GCACCTCACC CAGCTCACCT CACTCTCGAA GTTTGTCTAC
GAGATTCTCA ACATGCCGTC AAATACCCGG GCGCCTTTTG TCGGGAAATC GGCATTTGCC
CACAAAGGGG GTATCCATGT CAGCGCAGTC ATGAAAGAGA GCTCACTCTA CGAGCATATC
AACCCCACAC AGGTCGGAAA CCGCCAAAGG GTCCTTGTCT CCGAGCTTGC CGGCCAGAGC
AACATCCGGT ACAAGGCACA CGAACTCGGC ATCACCCTGC CCGAAAAAAG CGAACTCTTC
AAGAATATCG TGCACCACAT CAAGGAGCTC GAACACGAAG GGTACCAGTT TGACGGAGCC
GAAGCCTCAT TCGAACTCCT GCTGCATAAA GAGATCGGCA ACTTCAAGCC ATTTTTTGAA
GTGCTTGAAA CCAAGGTGCA TATCGAATCG AGCAAGAACG CCAAAAACGT CGACCAGGCA
GTACTCAAGG TCAGGGTTGG AGAGGAGATA GAACATATCG CCGCCGACGG TGACGGCCCG
GTCAACGCCC TCGACAAGGC GCTCCGCAAA GCGCTGATCC ACTTCTACCC CGAAATCAAG
AGCATCAAGC TGGTTGACTA TAAAGTTCGT GTACTCGAAG AAAAACGGGG AACCAGCGCC
AAGGTGCGGG TACTGATAGA GTCAAGCAAT GGCCGCTTCA CCTGGGGAAC AGTCGGTGTC
TCCACAAACA TCATTGAAGC AAGCCTCCAC GCCCTTGAAG ACAGCATGAA CTACCACCTC
TTCACGCTGA AGGCATCAGC TCCTGCTGCA AAACAGGTAC CACAGGGATG A
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| Protein sequence | MTVTTKKIEL YDTTLRDGTQ GEHINLSVQD KLLIAQKLDE FGMDYIEGGW PSSNPKDEEF
FIKARQLSFK HARLTAFGST ARFVKSVESD PNLLGLLHSE TPVITIFGKT WQAHSEKSLG
ISDEENAELI YRSVAFLKQQ GREVFFDAEH FFDGYKNNPE FALKMLLSAV EGGASRIVLC
DTNGGSLPHE VTDIVSRVLA VTGVPVGIHS HNDGDLAVAN SIASVMAGAT HIQGTINGIG
ERCGNANLIS IIPNVMLKLQ RSFTFVEHLT QLTSLSKFVY EILNMPSNTR APFVGKSAFA
HKGGIHVSAV MKESSLYEHI NPTQVGNRQR VLVSELAGQS NIRYKAHELG ITLPEKSELF
KNIVHHIKEL EHEGYQFDGA EASFELLLHK EIGNFKPFFE VLETKVHIES SKNAKNVDQA
VLKVRVGEEI EHIAADGDGP VNALDKALRK ALIHFYPEIK SIKLVDYKVR VLEEKRGTSA
KVRVLIESSN GRFTWGTVGV STNIIEASLH ALEDSMNYHL FTLKASAPAA KQVPQG
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