| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ppha_1530 |
|---|
| Symbol | |
|---|
| ID | 6463443 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pelodictyon phaeoclathratiforme BU-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011060 |
|---|
| Strand | + |
|---|
| Start bp | 1614869 |
|---|
| End bp | 1615906 |
|---|
| Gene Length | 1038 bp |
|---|
| Protein Length | 345 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 642727756 |
|---|
| Product | inner-membrane translocator |
|---|
| Protein accession | YP_002018396 |
|---|
| Protein GI | 194336602 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4603] ABC-type uncharacterized transport system, permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTAGAA AGAGCCTCAC ATTGCTCATC CCCATACTCG CGATCCTCAC AGCTTTTGTT
GTCAGCAGTC TGCTTATTTT CATGGCAGGT CGCGATCCGG TCATGATTTT CCAAAAAATG
TTTCATGCCA CACTTGGCTC GCCATACGGA ACCGGGCAGG TGCTCTTCAA AATGACAACA
CTTGTTTTTG TAGCCCTTGC CGTTGCACTC CCCTTCCAGG TCAGACTCTT CAACATCGGT
GCTGAGGGGC AGCTTCAGAT GGGCGCCTTT GCAGCAGCAA TGACCGGAGC AATGCTTCCT
GCCTTCGTCC CACCACTTGC AGCAATCACG CTCTGTATCA TATCGGCAAT GGCGACAGGT
GCATGCTGGG CGCTTGTTGC GGGCGTGCTC AAAGTACGCT TCGGCGTCAA TGAGGTCATT
GCAACCATCA TGCTCAATTT TATTGCCCAG GGTATTACCG GATACTTGCT TACCTGGCAC
TTTGCGATCC CCTCAACAGA CCACACTCCA CCAATCACGG CCGCAGCAAC CATACCAACT
TTCGATACCG TAACAGGCTG GTTCGCCAAC TCACCAGCAA ATCTCAGTAC ACTGCTTGCT
CTCACTCTTG CCCTGCTCTT CCAGATTCTG CTCTTTCATT CAAGATATGG CTATGAGATG
CGAGCTGCCG GCATGCAACC TGATGCTGCC CGATATGGAG GAATCAATGC CGGGATGCAT
ACACTCACCG CAATGGGTAT CGGTGGCGCT GCAGCCGGTC TGGGAGCCGC GAACCTCGTC
CTCGGCTACA AACACTACTA TGAAGCTGGA ATAAGTGGAG GAATCGGCTT TACAGGAATC
GCCGTCGCAC TTCTCGCCGG TGCCCATCCG TTATGGATAC TTCTCTCAGC CCTCTTTTTC
GGAGTCCTCG AATATGGAGG ACTGACCGTC AATGCATACA TCCCAAAGGA TATTTTCATG
ATCATTGAAG CCCTCACCAT CCTTCTCGTC ATTACCTTCA GCGCTCTTGG CAGAAGATGG
CTGCATGAGA AAAATTAA
|
|---|
| Protein sequence | MSRKSLTLLI PILAILTAFV VSSLLIFMAG RDPVMIFQKM FHATLGSPYG TGQVLFKMTT
LVFVALAVAL PFQVRLFNIG AEGQLQMGAF AAAMTGAMLP AFVPPLAAIT LCIISAMATG
ACWALVAGVL KVRFGVNEVI ATIMLNFIAQ GITGYLLTWH FAIPSTDHTP PITAAATIPT
FDTVTGWFAN SPANLSTLLA LTLALLFQIL LFHSRYGYEM RAAGMQPDAA RYGGINAGMH
TLTAMGIGGA AAGLGAANLV LGYKHYYEAG ISGGIGFTGI AVALLAGAHP LWILLSALFF
GVLEYGGLTV NAYIPKDIFM IIEALTILLV ITFSALGRRW LHEKN
|
|---|
| |