| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ppha_0827 |
|---|
| Symbol | |
|---|
| ID | 6461196 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pelodictyon phaeoclathratiforme BU-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011060 |
|---|
| Strand | - |
|---|
| Start bp | 862663 |
|---|
| End bp | 863862 |
|---|
| Gene Length | 1200 bp |
|---|
| Protein Length | 399 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 642727079 |
|---|
| Product | tryptophan synthase subunit beta |
|---|
| Protein accession | YP_002017733 |
|---|
| Protein GI | 194335939 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0133] Tryptophan synthase beta chain |
|---|
| TIGRFAM ID | [TIGR00263] tryptophan synthase, beta subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTGCCCT CTGATTATTC CGCACCCGAT ACTTCCGGTC ATTTCGGCTG TTTCGGCGGC
AAGTTTATCC CTGAAACGCT CTTTAAAAAT GCCGCCGATC TTGAATCGGA ATACCTTAAG
GCAAAAAGCG ATCCGGCCTT TCAGGCGACG CTTGACAAAC TGCTCCGTGA TTATGTAGGG
CGACCGACCC CTCTCTATCA TGCAGAACGA CTCAGCAGAA CGCTGCAGGG AGCACAGATC
TATCTCAAGC GGGAGGATCT CTGCCATACG GGAGCCCATA AAATCAATAA TGCACTCGGC
CAGGTGCTGC TCGCCCGCCG TATGGGCAAG AGAAGGGTTA TTGCTGAAAC CGGCGCCGGT
CAGCACGGAG TAGCCACCGC AACCGTCTGT GCCCTTTTCG ATCTTGAGTG CATTGTCTAT
ATGGGTGAAG AGGACATTCG GCGGCAGGCG CCAAACGTGG CAAGAATGAA ACTGCTTGGC
GCAGAGGTTC GGCCAGTCGG AAGTGGTTCA AAAACGCTGA AAGACGCAAC AAGCGAGGCT
ATCCGCGACT GGATGAATAA TCCTGAAGAG ACCTTTTACA TTATAGGCTC GGTGGTCGGT
ATGCATCCCT ATCCGATGAT TGTTCGGGAT TTTCAGGCCG TCATAGGCAA AGAGACCCGT
TCGCAGATTC TGGCGCAGGC AGGAAGGCTT CCTGATGTTA TCACGGCATG TGTTGGCGGC
GGCAGCAATG CGGTGGGTAT GTTTTATGAG TTTCTGAAGG ATGCCCGAGA GATCGAGCTG
GTTGGTGTGG AAGCGGCAGG AGAGGGACTC GACAAACGAC ATGCTGCCTC AATGACCCTC
GGAAAACCGG GAGTGCTTCA TGGCGCACTG ACAAAACTGC TGCAGAATGA AGATGGGCAG
GTTCAGGAGG CGCACTCCAT CTCGGCAGGC CTTGACTACC CCGGAGTCGG CCCTGAACAC
TGCTACCTGC AGGAACTCGG GCTGGTAACC TATACATCGA CAACAGACAC CGAGGCACTT
GCTGCGCTTG AAACACTGGC AAAAACCGAA GGCATTATTT GTGCGCTGGA ATCGGCCCAC
GCCATACATT ACGCCATTAC AAGGGCTCCA TCCATGCAAA AGGAGGCCAT CCTTGTGGTC
AACCTTTCGG GGCGCGGCGA CAAGGATATG GAGACCATCA TGAGGGAGCT TTCACTCTAA
|
|---|
| Protein sequence | MLPSDYSAPD TSGHFGCFGG KFIPETLFKN AADLESEYLK AKSDPAFQAT LDKLLRDYVG
RPTPLYHAER LSRTLQGAQI YLKREDLCHT GAHKINNALG QVLLARRMGK RRVIAETGAG
QHGVATATVC ALFDLECIVY MGEEDIRRQA PNVARMKLLG AEVRPVGSGS KTLKDATSEA
IRDWMNNPEE TFYIIGSVVG MHPYPMIVRD FQAVIGKETR SQILAQAGRL PDVITACVGG
GSNAVGMFYE FLKDAREIEL VGVEAAGEGL DKRHAASMTL GKPGVLHGAL TKLLQNEDGQ
VQEAHSISAG LDYPGVGPEH CYLQELGLVT YTSTTDTEAL AALETLAKTE GIICALESAH
AIHYAITRAP SMQKEAILVV NLSGRGDKDM ETIMRELSL
|
|---|
| |