| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ppha_0743 |
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| Symbol | |
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| ID | 6461389 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pelodictyon phaeoclathratiforme BU-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011060 |
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| Strand | + |
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| Start bp | 776460 |
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| End bp | 779459 |
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| Gene Length | 3000 bp |
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| Protein Length | 999 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 642726999 |
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| Product | type I site-specific deoxyribonuclease, HsdR family |
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| Protein accession | YP_002017654 |
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| Protein GI | 194335860 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0610] Type I site-specific restriction-modification system, R (restriction) subunit and related helicases |
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| TIGRFAM ID | [TIGR00348] type I site-specific deoxyribonuclease, HsdR family |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.575824 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACAACTG AAAACCAGAC CGAGCTGAGC CTGATCGATA AACTCCAGGA TCTCAAATAC
AGCTACCGCC CCGACATTCG CGACCGGGAC GCACTCGAAA AAAACTTCCG CGAAAAGTTC
GAAGCCCTCA ACCAGATTCA TCTCACCGAC GCCGAGTTTG CCCGGCTGCT CGATCAAATC
GTCACCCCGG ACGTTTTCGC CGCCTCTCGT CATCTGCGCG AACGCAACAG CTTCGAGCGC
GACGACGGCA CACCACTCTT CTACACTCTG GTCAACATCC GGGAGTGGTG CAAAAACAGC
TTCGAGGTCG TCAACCAGCT CCGCATCAAC ACCAACAACA GCCATCACCG CTACGATGTG
TTGCTCCTCA TCAACGGTGT GCCGGTGGTT CAGATCGAGC TGAAGACCCT CGCCATCAGC
CCGCGCCGCG CCATGCAGCA GATTGTCGAG TACAAAAACG ACCCCGGCAA CGGCTACAGC
AAAACCCTGC TCTGCTTTTT GCAACTCTTC ATCGTCAGCA ACCGCACCGA CACCTGGTAC
TTCGCCAACA ATAACAGTCG CCACTTCAGC TTTAACGCCG ACGAGCGTTT TCTGCCGTTC
TACCAGTTCG CCGGAGAAGA CAACAAAAAA ATCACCCATC TCGACAGCTT CGCCGAAAAG
TTCCTCGCCA AATGCACCCT CGGCGAAATG ATCAGCCGCT ACATGGTGCT GGTGACGAGC
GAGCAAAAGC TGATGATGAT GCGCCCCTAC CAGATCTATG CCGTCAAGGC TATCGTGGAG
TGCATTCACC AGAACTGCGG TAACGGCTAC ATCTGGCACA CCACCGGCAG CGGCAAAACC
CTCACCTCCT TCAAGGCATC AACCCTGCTC AAGGATAACC CGGATATCGA CAAATGCCTT
TTCGTCGTTG ACCGCAAAGA CCTCGACCGG CAGACGCGGG AGGAGTTCAA CCGCTTTCAG
GAGAAGTGCG TCGAAGAGAA CACCAACACC GAAACCCTGG TGCAGCGGTT GCTCTCCGAT
GACTATGCCA ATAAAGTGAT CGTCACCACC ATCCAGAAGC TCGGCCTTGC CCTCGACGGC
AGCAACAAAC GCAACTACAA GGAGCGGCTC GAACTGCTCC GCAAAAAGCG CATGGTTTTC
ATCTTTGACG AATGCCACCG CTCCCAGTTC GGCGAAAACC ACAAGGCGAT CAAAGAGTTT
TTCCCCAACG CCCAGCTCTT CGGCTTCACC GGCACACCAA TTTTCCCCGA AAACGCCAGC
TACCAGCAGA TTGAAGGGGA GCAGGCCACC TGGAAAACCA CGGAAGAGAT CTTCCAGCAG
CAACTGCATG CCTACACCAT TACCCACGCC ATCGAAGACC GCAACGTCCT GCGCTTCCAC
ATCGACTATT TCAAGCCCGA AGGTAAGAAC ACGCCCAAGC CCGGCGAAAC GCTGGCAAAA
AAAGCCATCG TTGAAGCCAT CCTTCAAAAA CACGATACCG CCACCTACGG GCGCAAGTTT
AACGCCCTTC TGGCCACCGC ATCTATCAAC GACGCCATAG CTTATCACGA GCTGTTCAAG
AGCATTCAGG AGGAAAAGCA GGCCAAAGAT GAAAATTTCC AGCCACTCAA CATCGCCTGC
GTCTTTTCCC CGCCTGCCCA GGCCATTGCT GGTGATGCTG GGAATCGAAA CGAAAAGAAT
GTGGCAGACA TCAAGCAGCT TCAGGAAGAT CTGCCACAGG AAAAGGCCGA TAACGAGGAA
GACCCGGACA AAAAAAAGGC GGCCCTCAAA GCCATCATTG CCGACTACAA CGACCGTTAC
AAAACCAACC ACCGCATCGA CGAATTCGAC CTCTACTACC AAGATGTGCA AAAGCGTATC
AAAGATCAGC AATACCCCAA CCAGGACTTG CCGCACGCGC AGAAGATCGA CCTGATAATC
GTGGTCGACA TGCTGCTCAC CGGCTTCGAC TCCAAATTCC TGAACACCCT CTACGTCGAC
AAAAACCTCA AGTACCACGG GCTCATTCAG GCCTTCTCAC GCACCAACCG CGTACTGAAC
GGCACCAAGC CCTACGGCAC CATTCTCGAC TTCCGCCAGC AGCAAAGCGC CGTCGATGAA
GCCATCAAAC TATTCTCTGG CGAACAAGCC GACCGCGCCA CCGAAATCTG GCTGGTCGAT
TCCGCACCGG TGGTCATCAA CAAACTCGAA ATTGCGGTTA AAAAGCTGGA CGAATTCATG
CGCTCTCAGG GGCTGGAAAG CGCCCCTCAA GAGGTGGCGA ACCTCAAGGG CGACGCCGCA
CGAGGCCAGT TCATCAACCT CTTCAAGGAG GTGCAGCGCC TCAAGACCCA GCTCGACCAA
TACACCGACC TGACGCCGGA AAATGCCGCC AGCATCAGCC GGGTCATCCC ACAAGAGCAA
TTGCAGGGCT TCCGTGGCGT CTATCTCGAA ACCGCCCAGC GCATGAAAGA AAAACAGAAA
AAAGGCAGCG ACGGCCCGGA AACAGAGCAG CTCGACTTTG AATTCGTGCT CTTTGCCTCA
GCCATGATTG ATTACGATTA CATCATGACC CTGATTACAA GCTACTCGCA GCAACTGCCC
GGCAAACAAA AGATGACCCG CACCGAGCTT ATCGGTCTCA TCGACTCCGA GGCCAACCTC
CTTGAAGTTC GCGAAGACAT TGCCGACTAT ATTGGCACCC TCAAGTCAGG CGAAGGGTTG
AAAGAGAGCG ACATCCGTCA GGGTTACGAA ACCTTCAAGG CCGAAAAGAG CGCCCAACAA
CTGGCCGAAA TTGCCGAAAA GCACGGACTG GAAACCTCCG TGCTCCAGGC CTTTGTCGAT
GGCATCATGC AGCGCATGAT CTTCGACGGC GAACACCTGA CCGATCTGCT CGCCCCGCTC
GGCCTCAACT GGAAACAGAG AAGGCAAAAC GAGCTGGCCC TGATGGAAGA GCTGATTCCC
GTGCTGCACA AACTTGCGCA AGGACGCGAA ATTTCAGGGC TGGAGGCGTA TGAGCAATAA
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| Protein sequence | MTTENQTELS LIDKLQDLKY SYRPDIRDRD ALEKNFREKF EALNQIHLTD AEFARLLDQI
VTPDVFAASR HLRERNSFER DDGTPLFYTL VNIREWCKNS FEVVNQLRIN TNNSHHRYDV
LLLINGVPVV QIELKTLAIS PRRAMQQIVE YKNDPGNGYS KTLLCFLQLF IVSNRTDTWY
FANNNSRHFS FNADERFLPF YQFAGEDNKK ITHLDSFAEK FLAKCTLGEM ISRYMVLVTS
EQKLMMMRPY QIYAVKAIVE CIHQNCGNGY IWHTTGSGKT LTSFKASTLL KDNPDIDKCL
FVVDRKDLDR QTREEFNRFQ EKCVEENTNT ETLVQRLLSD DYANKVIVTT IQKLGLALDG
SNKRNYKERL ELLRKKRMVF IFDECHRSQF GENHKAIKEF FPNAQLFGFT GTPIFPENAS
YQQIEGEQAT WKTTEEIFQQ QLHAYTITHA IEDRNVLRFH IDYFKPEGKN TPKPGETLAK
KAIVEAILQK HDTATYGRKF NALLATASIN DAIAYHELFK SIQEEKQAKD ENFQPLNIAC
VFSPPAQAIA GDAGNRNEKN VADIKQLQED LPQEKADNEE DPDKKKAALK AIIADYNDRY
KTNHRIDEFD LYYQDVQKRI KDQQYPNQDL PHAQKIDLII VVDMLLTGFD SKFLNTLYVD
KNLKYHGLIQ AFSRTNRVLN GTKPYGTILD FRQQQSAVDE AIKLFSGEQA DRATEIWLVD
SAPVVINKLE IAVKKLDEFM RSQGLESAPQ EVANLKGDAA RGQFINLFKE VQRLKTQLDQ
YTDLTPENAA SISRVIPQEQ LQGFRGVYLE TAQRMKEKQK KGSDGPETEQ LDFEFVLFAS
AMIDYDYIMT LITSYSQQLP GKQKMTRTEL IGLIDSEANL LEVREDIADY IGTLKSGEGL
KESDIRQGYE TFKAEKSAQQ LAEIAEKHGL ETSVLQAFVD GIMQRMIFDG EHLTDLLAPL
GLNWKQRRQN ELALMEELIP VLHKLAQGRE ISGLEAYEQ
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