| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ppha_0520 |
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| Symbol | |
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| ID | 6461987 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pelodictyon phaeoclathratiforme BU-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011060 |
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| Strand | + |
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| Start bp | 509135 |
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| End bp | 511078 |
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| Gene Length | 1944 bp |
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| Protein Length | 647 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 642726806 |
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| Product | polysaccharide biosynthesis protein CapD |
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| Protein accession | YP_002017461 |
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| Protein GI | 194335667 |
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| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1086] Predicted nucleoside-diphosphate sugar epimerases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGGCAGGA GGGCTCTTGC CTCTTCCCGC TATGTCAAGC TGCTGGTTGT TGTCGCATTC
GACATCTTCG CAGCGCTGCT AACGGTCTGG ATGGCATTCT CATTCACCCG TCAACTCCTG
CATCAGCCGG AGGGGCTGGA GTGGCTGCTC TATCTGCTTG CGCCAGCTCT GATGCTCCCG
ATCTTTGCTC TTTCAGGCAT CTACGGCACC ATCCAGCGTT ATAACAGCTT TGAAGGATTT
ATCACCGTTT TCAAAAGCGT TTTTTTCTAC GGCGCCGCAT TTGTATGCCT TTTGCTGCTC
CTGCCTCTTC CGAAGATCTC CATTGTCGTC GGAATCCTTC AGCCGCTGCT GCTCCTGCTG
ATGACCGGGG GAAGCCGTGC AATGGTGCGC TATCTGAGTA CAACAGTAAC CACGACGCCT
GAAAAAAGGT GTGAAGCGCC CAACAAGCTC CTGATCTACG GAGCAGGTTC CGCAGGGGTG
GAGATTGTCA ATAGCATCAA CAGAAGCAAT AAATTTACCC TTGCCGGTTT TATTGACGAC
AATCCGGATT TGCAGGGGCG AACCATCAAC CGGATGAAGG TCTTCAGCCC TGCGGAGGCC
GAAGAGCTGA TCCAAAGCGA GGGAATCAAC AACATCCTTC TCGCAATGCC ATCGGCAACT
CGTACCCGGC GCAACGAAAT TGTTGAGCAA TACCGAAAAT ACCCGGTGCG TATCCAGATG
CTGCCGGGAG TTGAAGAGCT TGCCGAAGGA AAGGTCACCA TCTCCGACAT CAAGACCGTA
GACATCGAAG ATCTCCTTGG TCGTGATCCG GCGCCGCTCG ATCACGCCCT CGTCAAACAG
GTAATTACCG GCCGGGTTGT AATGGTCACC GGCGCCGGAG GCTCAATCGG CAGCGAACTC
TGCCGCCAAC TCCTTCAGGC CCAGCCATCA ACACTGCTGC TGCTCGACAA CGCCGAACAC
AACCTCTACA CCATTCACAG CGACCTTACC CAGCGCCACG CACGCCTCTC ATCCGCAACG
CGGATAGTGC CGCTGCTCTG CGACGTGACC AATGCAATCC GTATAACAGA AATATTCCGC
GTTTTTCAAC CTGAAGTGAT CTACCATGCC GCAGCCTACA AGCATGTGCC GATGGTCGAG
CACAACCCCG CAGAAGGGAT ACGCAACAAC GTTTTCGGAA CCCATACGGT GGCAGAAGCT
GCCCTGCAGC AGGGAGTAAC AAGCGTCGTC CTCGTCAGTA CCGACAAGGC AGTGCGCCCA
ACCAACGTGA TGGGCGCAAG CAAACGGCTC TGCGAAATGA TCCTGCAGGC ACTTGCCGAG
GAGCCCGGCC ATACAACCTG CTTCTCCATG GTGCGCTTCG GCAATGTCCT CGGCTCAAGC
GGTTCCGTTG TCCCTCTTTT CCGCAGTCAG ATCAACAGCG GTGGCCCCTT CACCATCACC
CACAAGGAGA TTACCCGCTA CTTCATGACC ATCCCCGAAG CGGCACAGCT TGTCATTCAG
GCAGGCGCCA TGGCCTCACC AGGCGATCTT CATCTCCTCG AAATGGGCGA CCCGGTCAAA
ATCATCGACC TTGCCCGAAA GATGGTAGAA CTCTCCGGCC TCACCATTCG CGACCATGAA
AACCCTGAAG GTGACATTGA AATACGGGTA ACCGGCCTTC GCCCAGGCGA AAAACTCTAC
GAAGAGTTGC TGATCGGCAA CCATTCAAGC CCTTCAGCCA ACCCCCGCAT TTTCAAAGCC
AAGGAGCACT TCATACCCTG GAGTGAACTG CAGGAAGAAC TTGAGCAACT GACCACAGCC
ATACACAGCA ATGACATCAA GAGCATCAAA AAGATCCTGA AAAAGATAGT CCCCGAATAC
AGCCCAGGGA TCACCACCTC AGACCTGCTC TCCATGGAAA AGCAAAGCAA AAACGGCAAA
AACCACCACA TACCAGCCCA GTAA
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| Protein sequence | MGRRALASSR YVKLLVVVAF DIFAALLTVW MAFSFTRQLL HQPEGLEWLL YLLAPALMLP
IFALSGIYGT IQRYNSFEGF ITVFKSVFFY GAAFVCLLLL LPLPKISIVV GILQPLLLLL
MTGGSRAMVR YLSTTVTTTP EKRCEAPNKL LIYGAGSAGV EIVNSINRSN KFTLAGFIDD
NPDLQGRTIN RMKVFSPAEA EELIQSEGIN NILLAMPSAT RTRRNEIVEQ YRKYPVRIQM
LPGVEELAEG KVTISDIKTV DIEDLLGRDP APLDHALVKQ VITGRVVMVT GAGGSIGSEL
CRQLLQAQPS TLLLLDNAEH NLYTIHSDLT QRHARLSSAT RIVPLLCDVT NAIRITEIFR
VFQPEVIYHA AAYKHVPMVE HNPAEGIRNN VFGTHTVAEA ALQQGVTSVV LVSTDKAVRP
TNVMGASKRL CEMILQALAE EPGHTTCFSM VRFGNVLGSS GSVVPLFRSQ INSGGPFTIT
HKEITRYFMT IPEAAQLVIQ AGAMASPGDL HLLEMGDPVK IIDLARKMVE LSGLTIRDHE
NPEGDIEIRV TGLRPGEKLY EELLIGNHSS PSANPRIFKA KEHFIPWSEL QEELEQLTTA
IHSNDIKSIK KILKKIVPEY SPGITTSDLL SMEKQSKNGK NHHIPAQ
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